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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCCAATTTTGTTTCATTAAAGAGTCTCCGAAGCTTCGCCCTCAGCTGTTCCTTGAATGGCGCAGAGGCGGCAGACAAAAAGATTCCAATTGAGAAGAgtaatgagttttttgggtgaagctctctcgcacttttgtctcgctgtttcttttcctgatggaggtgctttctggatttgcttttgcag

Basic information

species Vitis vinifera
transcript Vv12s0055g01100.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110398042|gb|EC964119.1|EC964119
EST:     TTCCTTGAATGGCGCAGAGGCGGCAGACAAAAAGATTCCAATTGAGAAGA                         GGTTTCCCGCATTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTT
genomic: TTCCTTGAATGGCGCAGAGGCGGCAGACAAAAAGATTCCAATTGAGAAGAgtaatgagtt ... gcttttgcagGGTTCCCCGCATTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTT
EST: gi|110372109|gb|EC936254.1|EC936254
EST:     TTCCTTGAATGGCGCAGAGGCGGCAGACAAAAAGATTCCAATTGAGAAGA                         GGTTTCCCGCATTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTT
genomic: TTCCTTGAATGGCGCAGAGGCGGCAGACAAAAAGATTCCAATTGAGAAGAgtaatgagtt ... gcttttgcagGGTTCCCCGCATTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTT