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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGACTATTATCTCAATCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACAATGACTCACATAAGCACCCGTGTGGCAGGCACAATgtaagatcctcaaaagtcaaggcccttagttccttgtttattctcttttttgggatttttttcatttatccccaaagtttaaaactgggcttttatgttactgaagtag

Basic information

species Vitis vinifera
transcript Vv12s0055g00640.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00640.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 20
TGCTTGACTATTATCTCAATCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACAATGACTCACATAAGCACCCGTGTGGCAGGCACAATgtaagatcctcaaaagtcaaggcccttagttccttgtttattctcttttttgggatttttttcatttatccccaaagtttaaaactgggcttttatgttactgaagtag
| |||||     |||||||||||||||| |||||||| ||  |||||||||| ||||||||||  |  || ||  | |||||    || || || ||| |||||| || |       ||     || |  |   | ||||    ||      ||| |  |     | ||     |  |||     | |||| |  | |  |        
TACTTGATGCCAATCTCAATCCTAAGATCTCAGATTTCGGGCTGGCCAAACTTTATGATGACAAGAAAACGCATGTCAGCACGAAAGTTGCTGGTACATTgtaagttcatt-----ccatctttctcacctttgtctttacaaactac----ggagtactaaagctaat----gagattt-----ttggctctcctttgtccag-----

upper sequence: Vv12s0055g00640.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 5'ss of exon 22
TGCTTGACTATTATCTCAATCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACAATGACTCACATAAGCACCCGTGTGGCAGGCACAATgtaag-atcctcaaaagtcaaggcccttagttccttgtttattctcttttttgggatttttttcatttatccccaaagtttaaaactgggcttttatgttactgaagtag
| ||||||    |||||||||||||||| |||||||||||  | |||||||| ||||||||||  | ||| ||  | |||||    || || || ||| |||||| |   || |         || |||  |      | ||  |  | ||   | | |||||   | ||||     ||  |                            
TACTTGACGCCAATCTCAATCCTAAGATCTCAGATTTTGGGCTAGCCAAACTTTATGATGACAAGAAGACGCATGTCAGCACGAAAGTTGCTGGTACATTgtaagtacattccatctgttccacctttatgtttacaatcatatttatgttaatggtatttttgggt-atccttt--gtccag---------------------------

upper sequence: Vv12s0055g00640.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g52606.2 (Oryza sativa), 5'ss of exon 19
TGCTTGACTATTATCTCAATCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACAATGACTCACATAAGCACCCGTGTGGCAGGCACAATgtaagatcctcaaaagtcaaggcccttagttccttgtttattctcttttttgggatttttttcatttatccccaaagtttaaaactgggcttttatgttactgaagtag
| ||||||  |||||||||||||||||| |||||||||||  | || ||||| ||||||||||  | ||| ||  | |||||    || || || ||  |||||| || |       ||     |  |  | | ||||||     | |||| | |  | |   |        |    ||||   ||   ||||||| |           
TACTTGACGCTTATCTCAATCCTAAGATCTCAGATTTTGGGCTAGCTAAACTTTATGATGACAAGAAGACGCATGTTAGCACAAAAGTTGCTGGTACCTTgtaagttcatt-----ccatctttcgcaccttcatgtttacaaattattttcgtacctgtgctaa-------cgggatttatggcttttcttttatctag---------

upper sequence: Vv12s0055g00640.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 5'ss of exon 18
TGCTTGACTATTATCTCAATCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACAATGACTCACATAAGCACCCGTGTGGCAGGCACAATgtaagatcctcaaaagtcaaggcccttagttccttgtttattctcttttttgggatttttttcatttatccccaaagtttaaaactgggcttttatgttactgaagtag
|  |||||    |||||||||||||||| || ||||||||  | |||||||| ||||||||||  | ||| ||  | |||||    || || |||||| ||||||  | |             ||||  ||||      |   |  | |||   ||||||   | ||||       ||       | |||| |  | |  |        
TAATTGACGCCAATCTCAATCCTAAGATCTCTGATTTTGGGCTAGCCAAACTTTATGATGACAAGAAGACGCATGTCAGCACGAAGGTTGCTGGCACATTgtaagtacatt------------ccttctttccc-----acctttatgtttacaatttttcatacttatgttggcggtggcttttttggctctcctttgtccag-----

upper sequence: Vv12s0055g00640.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g52640.1 (Oryza sativa), 5'ss of exon 22
TGCTTGACTATTATCTCAATCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACAATGACTCACATAAGCACCCGTGTGGCAGGCACAATgtaagatcctcaaaagtcaaggcccttagttccttgtttattctcttttttgggatttttttcatt-tatccccaaagtttaaaactgggcttttatgttactgaagtag-
| ||||||    |||||||||||||||| || ||||| ||  | |||||||| ||||||||||  ||||||||  | |||||    || || || ||| ||||||    |            || |   | | || ||| || |          | | |||| ||   || |   || |   |       || ||| |   |  ||  |  
TACTTGACGCCAATCTCAATCCTAAGATCTCGGATTTCGGGCTAGCCAAACTTTATGATGACAAGATGACTCATGTTAGCACAAAAGTTGCTGGTACATTgtaagtatatt-----------ccatctttgcattttttcttttaaaaaaaataactattttaatggcatgcaagaaataagaggacatcctcttaaggggcaaaaaaaag

upper sequence: Vv12s0055g00640.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 21
TGCTTGACTATTATCTCAATCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACAATGACTCACATAAGCACCCGTGTGGCAGGCACAATgtaagatcctcaaa---agtcaaggcccttagttccttgtttattctcttttt------tgggatttttttcatttatccccaaagtttaaaactgggcttttatgttactgaagtag
| ||||| |   |  | |  || || || || |||||||| ||||| ||| | |||||||||| || ||| || |||||||| |||||||| |||||||||||||    | | |   | |||       |   |  |||||  |||  |||||      ||  ||| ||||||| ||     ||  |||||         ||| |  |  |||||   
TTCTTGATTTGGAGTTTATACCAAAAATATCTGATTTTGGGTTGGCAAAATTATATGATGACAAAAAGACCCATATAAGCACTCGTGTGGCTGGCACAATgtaagtcattaacacctaatcatattatattaatttttgttctttcattttttattgcatgtaattgttttcatatacaataaacttttaatgtactcaattttttgtgatgaag---