Sequence
atgc intronic sequence ATGC exonic sequenceGGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCATGTATTGGGCCACAATGGGGAAATCAATACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggatttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatgaaatttgttttatttattctctgaga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0055g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G41540.1 (Glycine max), 5'ss of exon 8
GGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCATGTATTGGGCCACAATGGGGAAATCAATACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggatttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatgaaatttgttttatttattctctgaga--
| || |||||||| || |||||||||||||| || |||||||| |||| |||||||||||||||||| |||||||| |||||| |||| ||||||||||||||||| | || | | | || | | || || || | | | | ||| | | | | || || | | | || | | |
GATTTTCTACAAATACTTTTCCTAGTTGGGATCGTGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAAATCAACACACTTAGAGGGAATGTAAACTGgtatgtcttgaaaaagtataattatagtgtaagacctagaagaatgaattctataatg-cactacaaattta-aatgttcgtatcagtaatatcccggtaca
upper sequence: Vv12s0055g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G13280.1 (Glycine max), 5'ss of exon 8
GGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCATGTATTGGGCCACAATGGGGAAATCAATACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggatttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatgaaatttgttttatttattctctgaga----
| || || ||||| || |||||||||||||| || |||||||| |||| |||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||| | || | | | || | || | || || | | | | || | | | | |||| | | | || | |
GATTTTCGACAAATACTTTTCCTAGTTGGGATCGTGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAAATCAACACACTTAAAGGAAATGTAAACTGgtatgtcttgaaaaactatta--atatagtttgagccagaagaatgaattctataatg-cactgcaaattta-aatggttgtatcagtaatatcccggtgcagt
upper sequence: Vv12s0055g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G16450.1 (Glycine max), 5'ss of exon 4
GGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCATGTATTGGGCCACAATGGGGAAATCAATACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggatttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatgaaat-ttgttttatttattctctgaga---
|||| |||||||| || || ||||| ||||| || |||||||| |||| |||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||| | || ||| | | ||| || || || | ||| | | | || || | | |||| | | | | ||
GGTTTTCTACAAATACTTTCCCTAGCTGGGATCGTGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAAATCAACACACTCAGAGGCAATGTTAACTGgtatgtttttaa-taagttttgcattactc---tagtttgatggtatgtgacctgtaagaatgaatacttattgcactgcaaatttaaatggtgtatcagcatt
upper sequence: Vv12s0055g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA14G32500.1 (Glycine max), 5'ss of exon 8
GGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCATGTATTGGGCCACAATGGGGAAATCAATACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggat-ttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatg-aaatttgttttatttattctctgaga
|||| |||||||| || || ||||| ||||| || |||||||| |||| ||||||||| ||||| || |||||||| ||||| |||||||||| |||||||||||| | || | || | ||| | | | | | || | || || | || | | || ||| || | | ||| |
GGTTTTCTACAAATACTTTCCCTAGCTGGGATCGTGCTCAACCTATGCGTGTATTGGGACACAACGGAGAAATCAACACACTCAGAGGCAATGTTAACTGgtatgttttgaataagttttgcattactgtagtttgatggtatgacctataa--ggacgaatatttattgcactgcaaacttaaatggtgtatcagcattatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110364023|gb|EC927662.1|EC927662EST: GTATTGGGCCACAATGGGGAAATCAACACACTTCAAGGCAATGTAAACTG GATGAAGGCACGTGAGGGTCTATTGAAGTGCAAGGAACTTGGCCTATCAAA
genomic: GTATTGGGCCACAATGGGGAAATCAATACACTTCGAGGCAATGTAAACTGgtatgttctc ... ctttttttagGATGAAGGCACGTGAGGATCTATTGAAGTGCAAGGAACTTGGCCTATCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCATGTATTGGGCCACAATGGGGAAATCAATACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggatttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatgaaatttgttttatttattctctgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa