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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGACTATTATCTCAATCCTAAGATTTCAGATTTTGGTTTGGCCAAACAGTATGATGGCACAATGACTCACATAAGCACCCGTGTTGCAGGCACAATgtaagatcctcaaaagtcaaggccctatgttccttgtttattctcttttttgggatatttttcatgtatcctcaaagttttaaactggtcttttatgttactgatgtag

Basic information

species Vitis vinifera
transcript Vv12s0055g00600.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00600.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g52606.2 (Oryza sativa), 5'ss of exon 19
TGCTTGACTATTATCTCAATCCTAAGATTTCAGATTTTGGTTTGGCCAAACAGTATGATGGCACAATGACTCACATAAGCACCCGTGTTGCAGGCACAATgtaagatcctcaaaagtcaaggccctatgttccttgtttattctcttttttgggatatttttcatgtatcctcaaagttttaaactggtcttttatgttactgatgtag
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TACTTGACGCTTATCTCAATCCTAAGATCTCAGATTTTGGGCTAGCTAAACTTTATGATGACAAGAAGACGCATGTTAGCACAAAAGTTGCTGGTACCTTgtaagttcattccatctttcgcacct-----tcatgtttacaaattattttcgta-------cctgtgctaacgggatttatggcttttcttttatctag---------