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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAATGCTCTTCAATTATTCTCACCCCGTCTTGCAATTGTTGATGAACATCTGACTTGACATCTTCCAAGACAGTGGTTAACATCCTTGAAAATTGAGgtatggcataatttgcaatgctcttatactttgtatttttatatgtccaagcttcaccatgattttaatttttttttttggtactaaatttattgcacat...

Basic information

species Vitis vinifera
transcript Vv12s0035g02060.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g02060.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os05g01470.2 (Oryza sativa), 5'ss of exon 8
TGAGAATGCTCTTCAATTATTCTCACCCCGTCTTGCAATTGTTGATGAACATCTGACTTGACATCTTCCAAGACAGTGGTTAACATCCTTGAAAATTGAGgtatggcataatttgcaatgctcttatactttgtatttttatatgt---ccaagcttcaccatg-attttaatttttttttttggtactaaatttattgcacat
 || |||||||||| ||||||||||||    ||||| || |||||||||||||||||  ||||  | ||||  || |||||||| || ||   ||||||||||   | ||||||       |  | |   |     || |  |  |   |||   ||      |    |      | |  ||| ||| |   | |  |   |  
AGAAAATGCTCTTCGATTATTCTCACCAGCGCTTGCGATCGTTGATGAACATCTGACCAGACACTTGCCAAAGCAATGGTTAACTTCTTTAGCAATTGAGgtac--cttaatttctctcttttctgtgagtgagtcttgtgcacattgaccagaatttgtttggcgcatctgagctctactttagtagtctctgtcatcttc--

upper sequence: Vv12s0035g02060.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G098039_T01 (Zea mays), 5'ss of exon 8
TGAGAATGCTCTTCAATTATTCTCACCCCGTCTTGCAATTGTTGATGAACATCTGACTTGACATCTTCCAAGACAGTGGTTAACATCCTTGAAAATTGAGgtatggcataatttgcaatgctcttatactttgtatttttatatgtccaagcttcaccatgattttaatttttttttttggtactaaatttattgcacat
 ||||||||||||||||| ||||||||    ||||||||||||||||||||| | ||  ||||  | || |  || ||||||||||| ||   ||||||||||          | || |     | |    ||  || | ||  |||      |      ||    |  ||||||| |   |   |              
AGAGAATGCTCTTCAATTGTTCTCACCGGCGCTTGCAATTGTTGATGAACATTTAACCAGACACTTGCCCAAGCAATGGTTAACATCTTTAGCAATTGAGgtaccttggttactccattatatctgtg---tgagttgtcatgggtctggatgttctgtagaacaca--tttttttgtgaatttcag-------------

upper sequence: Vv12s0035g02060.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G00210.1 (Glycine max), 5'ss of exon 8
TGAGAATGCTCTTCAATTATTCTCACCCCGTCTTGCAATTGTTGATGAACATCTGACTTGACATCTTCCAAGACAGTGGTTAACATCCTTGAAAATTGAGgtatggcataatttgcaatgctcttatactttgtatttt-tatatgtccaagcttcaccatgattttaatttttttttttg--gtactaaatttat-tgcacat
|||| |||||||||  || |||||||| || |||||| |||||||||||||||||||| ||||  | || || |||||||||||||| |  |   ||||||||||| |||   |||  || ||||    |||| ||||  |  || | |    ||  |  |  | |||      | | |||  | | |  | |||| || ||| 
TGAGCATGCTCTTCGCTTGTTCTCACCTCGCCTTGCAGTTGTTGATGAACATCTGACTCGACACTTACCTAGGCAGTGGTTAACATCTTCAACCCTTGAGgtatggaatagcatgccttgatctt---ttttgaatttgattaatattctgttttgtctgtattgttatcccaatgtgttgaagaaatgcagttatgtgaaca-

upper sequence: Vv12s0035g02060.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G28490.1 (Glycine max), 5'ss of exon 8
TGAGAATGCTCTTCAATTATTCTCACCCCGTCTTGCAATTGTTGATGAACATCTGACTTGACATCTTCCAAGACAGTGGTTAACATCCTTGAAAATTGAGgtatggcataa-tttgcaatgctcttatactttgtatttttatatgtccaagcttcaccatgattttaatttttttttttggtactaaatttat-tgcacat
||||||||||||||  || || ||||| || |||||| |||||||||||||||||||| ||||  | || || |||||||||||||| |    | ||||||||||| |||    |||  || |||| |      |   || |||| |    || ||   || ||| |     | | ||   | | |  | |||| || ||  
TGAGAATGCTCTTCGCTTGTTTTCACCTCGCCTTGCAGTTGTTGATGAACATCTGACTCGACACTTACCTAGGCAGTGGTTAACATCTTCAGCACTTGAGgtatggaataggcatgccttggtcttttttgaacttgattaatattttgttgcatctgtattattatcccaatgtgttgaagaaatgcaattatgtgaac--