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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGAGAGATGCAAGGCGTGGTGGTGGCGAATCCGTCCTACTGCTGCAGAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattcttcgatgattcaacaaatttctgataaaaataaacaatgatatgatttcatttcgaaatcattttatttatttgtttacttgttattcttttttgcgttaaaaaattcgcag

Basic information

species Vitis vinifera
transcript Vv12s0035g00770.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349812244|gb|FQ411839.1|FQ411839
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|349816925|gb|FQ405051.1|FQ405051
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|351033002|gb|FQ461891.1|FQ461891
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|351015380|gb|FQ447209.1|FQ447209
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|351019291|gb|FQ429451.1|FQ429451
EST:     GAGCCAAACGCGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|110383835|gb|EC948236.1|EC948236
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|349816960|gb|FQ405086.1|FQ405086
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|349814109|gb|FQ414343.1|FQ414343
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|351015690|gb|FQ427175.1|FQ427175
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|26262230|gb|CA813293.1|CA813293
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|110369819|gb|EC933988.1|EC933988
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|110708505|gb|EE086122.1|EE086122
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACAAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|349822331|gb|FQ412595.1|FQ412595
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|349828646|gb|FQ418381.1|FQ418381
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|351026904|gb|FQ436557.1|FQ436557
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTTG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|351032469|gb|FQ458834.1|FQ458834
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|349823025|gb|FQ400004.1|FQ400004
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|349823598|gb|FQ415008.1|FQ415008
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCCTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|33407802|gb|CF213429.1|CF213429
EST:     GAGCCAAACACGCCATAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|110713850|gb|EE090132.1|EE090132
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|110407299|gb|EC972896.1|EC972896
EST:     GCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
EST: gi|351017333|gb|FQ435685.1|FQ435685
EST:     GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAG                         ATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG
genomic: GAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattc ... aaattcgcagATTCCGAGCTTCTTCACGAGGGGGAGTGATCTGCGGCGGCGGGCCTCGTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGAGAGAGATGCAAGGCGTGGTGGTGGCGAATCCGTCCTACTGCTGCAGAGCCAAACACGCCCTAGAGCCTTCCTCTTCGTCCTCCTCACCCATCAAGgtttcgattcttcgatgattcaacaaatttctgataaaaataaacaatgatatgatttcatttcgaaatcattttatttatttgtttacttgttattcttttttgcgttaaaaaattcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC