1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTTTGGTTCTTGCGCTGTCTTCTAGCTTTTTCATTGGTGCTAGCTTCATTGTCAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAGgtatgcagtacttggttttggtgggattttgctttttctgttttgtttttttttttttttgtgtattttagtgtgcgtttttacaaatttgttgggtttt...
species | Vitis vinifera |
transcript | Vv12s0035g00720.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTCAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAG GGGTTGGAGGTTATTCTTACTTATATGAGCCACTTTGGTGGGTGGGCATGAEST: gi|161706210|gb|FC054968.1|FC054968
genomic: TGTCAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAGgtatgcagta ... gcttttacagGGGTTGGAGGTTATTCTTACTTATATGAGCCACTTTGGTGGGTGGGCATGA
EST: TGTCAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAG GGGTTGGAGGTTATTCTTACTTATATGAGCCACTTTGGTGGGTGGGCATGAEST: gi|161717532|gb|FC066885.1|FC066885
genomic: TGTCAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAGgtatgcagta ... gcttttacagGGGTTGGAGGTTATTCTTACTTATATGAGCCACTTTGGTGGGTGGGCATGA
EST: TGTCAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAG GGGTTGGAGGTTATTCTTACTTATATGAGCCACTTTGGTGGGTGGGCATGAEST: gi|110713706|gb|EE089862.1|EE089862
genomic: TGTCAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAGgtatgcagta ... gcttttacagGGGTTGGAGGTTATTCTTACTTATATGAGCCACTTTGGTGGGTGGGCATGA
EST: CAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAG GGGTTGGAGGTTATTCTTACTTATATGAGCCACTTTGGTGGGTGGGCATGAEST: gi|33403284|gb|CF208911.1|CF208911
genomic: CAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAGgtatgcagta ... gcttttacagGGGTTGGAGGTTATTCTTACTTATATGAGCCACTTTGGTGGGTGGGCATGA
EST: TGTCAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAG GGGTTGGAGGTTATTCTTACTTATATGAGCCACTTTGGTGGGTGGGCATGA
genomic: TGTCAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAGgtatgcagta ... gcttttacagGGGTTGGAGGTTATTCTTACTTATATGAGCCACTTTGGTGGGTGGGCATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTGGTTCTTGCGCTGTCTTCTAGCTTTTTCATTGGTGCTAGCTTCATTGTCAAGAAGAAGGGGTTGAAGAAGGCTGGGGCTTCTGGAATCAGAGCAGgtatgcagtacttggttttggtgggattttgctttttctgttttgtttttttttttttttgtgtattttagtgtgcgtttttacaaatttgttgggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG