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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAGAGAAGGAGACCAGCTGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtagaccataatgcactatgcttttactttggttgctagtttttatactttcattttgacatttttttttaatttgtttgtttctattttgttcccgttctatgatgatag

Basic information

species Vitis vinifera
transcript Vv12s0035g00190.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00190.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G61010.1 (Arabidopsis thaliana), 5'ss of exon 1
AACAAGAGAAGGAGACCAGCTGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtagaccataatgcactatgcttttactttggttgctagtttttatactttcattttgacatttttttttaatttgtttgtttctattttgttcccgttctatgatgatag
  |  |||| ||||| || || ||  |||| ||  |||| || |||| ||||||||| ||||||||||| ||||||||||    ||| ||||  ||  ||||   |     | |  | || | | |    |       ||||| ||  | |  ||  | ||| | || |   |   |||| || | || ||                    
TTCGCGAGATGGAGATCAACTTATCGTTACTCCGTTAGGAGCCGGAAGTGAAGTGGGTCGTTCCTGTGTTTACATGTCCTTCCGAGGCAAAAATATTCTGgtcagcttc--tccgttttgttctaatcaagcaaatgtgttttgattttgttgttggggcatgtcttatagttgattttggttgtgttgtgcag-----------------

upper sequence: Vv12s0035g00190.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S77_275V6.1 (Physcomitrella patens), 5'ss of exon 2
AACAAGAGAAGGAGACCAGCTGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtagaccataatgcactatgcttttactttggttgctagtttttatactttcattttg-acatttttttttaatttgtttgtttct-attttgttcccgttctatgatgatag
|||  | || || ||  |||||    | ||||| || |||||||||||||| || || ||||| |||||||||||| |||| ||||| |||||  |  ||||       ||   |    |   ||   ||  | | | |  || | | ||  |   || |  ||| ||   ||  | | | ||||| ||  |||||   |             
AACGCGGGAGGGGGATAAGCTGGAGGTCACCCCCCTTGGTGCTGGAAATGAGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATGgtgtgtaccaaaatatatgggccttctcttattggtttggcttgagaattaaaagatgcatgtttattgccaaactctctttttcttataatgttcttct-------------