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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAACAAGAGGAGACCAGCTGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtataccataatgcattattcgtttattttggttgctagtttttatactttgttttcgatattttttataatttgtttgtttctattttgttcctgttctgtgatgatag

Basic information

species Vitis vinifera
transcript Vv12s0035g00030.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G61010.1 (Arabidopsis thaliana), 5'ss of exon 1
ATTAACAAGA-GGAGACCAGCTGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtataccataatgcattattcgtttattttggttgctagtttttatactttgttttcgatattttttataatttgttt-gtttctattttgttcctgttctgtgatgatag
 ||  | ||| ||||| || || ||  |||| ||  |||| || |||| ||||||||| ||||||||||| ||||||||||    ||| ||||  ||  ||||   |      |  || |||  | ||   |       ||||| ||  | |  ||  |  || | ||||| ||  ||| | || | || ||                    
-TTCGCGAGATGGAGATCAACTTATCGTTACTCCGTTAGGAGCCGGAAGTGAAGTGGGTCGTTCCTGTGTTTACATGTCCTTCCGAGGCAAAAATATTCTGgtcagcttctccgttttgttc--taatcaagcaaatgtgttttgattttgttgttggggcatgtcttatagttgattttggttgtgttgtgcag-----------------

upper sequence: Vv12s0035g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S77_275V6.1 (Physcomitrella patens), 5'ss of exon 2
ATTAACAAGAGGAGACCAGCTGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtat--accataatgcattattcgtttatt-ttggttgctagtttttatactttgttttcgatattttttat--aatttgtttgtttctattttgttcctgttctgtgatgatag
|         || ||  |||||    | ||||| || |||||||||||||| || || ||||| |||||||||||| |||| ||||| |||||  |  |||| |  |||| |||  ||    | | | || ||||||  | | ||    | |      |  || ||| ||    || |   || ||  |||  ||||| | |             
AACGCGGGAGGGGGATAAGCTGGAGGTCACCCCCCTTGGTGCTGGAAATGAGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATGgtgtgtaccaaaatatatgggccttctcttattggtt--tggcttgagaattaaaagatgcatgtttattgccaaactctctttttcttataatgttcttct-------------