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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTTGCGGCTTCCGTTGCCGCGGCCTCTGCTACTGCAATCTCTGCGCCGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattgggccgaaattttggtgtttacctttctctttttcttctttttatctttcttttatctgaaatagctatctggtttctgtgaattttcgtt...

Basic information

species Vitis vinifera
transcript Vv12s0028g03790.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28959177|gb|CB339590.1|CB339590
EST:     CGTCCTTTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGTGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|28959331|gb|CB339666.1|CB339666
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGTGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|28965790|gb|CB344823.1|CB344823
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|110694261|gb|EE071212.1|EE071212
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|28965844|gb|CB344877.1|CB344877
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|110375456|gb|EC940443.1|EC940443
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|110375003|gb|EC939954.1|EC939954
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|110385514|gb|EC950047.1|EC950047
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|110695032|gb|EE072585.1|EE072585
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|110692721|gb|EE068335.1|EE068335
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|110694157|gb|EE071017.1|EE071017
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|110388826|gb|EC953619.1|EC953619
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
EST: gi|71871296|gb|DT020351.1|DT020351
EST:     CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGAT                         GAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC
genomic: CGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattg ... gatcttatagGAGGCTGTTGCGGGGAAAGATATTGAAAATTCAGAATCACAAAGGTCGTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCTTTGCGGCTTCCGTTGCCGCGGCCTCTGCTACTGCAATCTCTGCGCCGTCCTCTTCGGGTTTCCTCTGCAATTCAAAGATTCAACTTTCTCGCGATgtaagaattgggccgaaattttggtgtttacctttctctttttcttctttttatctttcttttatctgaaatagctatctggtttctgtgaattttcgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatag