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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagcctttttgtcttgctttgttttctttccccatgtttcctgtttgtttttcgagaaagtacttcccttgaaaattatccctgagaaaagccgagtt...

Basic information

species Vitis vinifera
transcript Vv12s0028g02020.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 1
GTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagcctttttgtcttgctttgttttctttccccatgtttcctgtttgtttttcgagaaagtacttcccttgaaaattatccctgagaaaagccgagtt----
||| | ||||||||| | |  | ||| |||||||||||||| ||||| || |||||||| || || |||  ||||||||||||||| ||| | |  || |||  |   |  || ||  |           | ||| | | |  || || |  |||||     |  | ||  |     || ||  |||    |   |  |     
GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtactactgcctcccccaccccctcctacccttttcttttgatt-tgattcgattcgcttttccctctcc---ttttctttgaatcgaaggggttctttt

upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G42900.1 (Glycine max), 5'ss of exon 1
GTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagcctttttgtcttgctttgttttctttccccatgtttcctgtttgtttttcgagaaagtacttcccttgaaaat--tatccctgagaaaagccgagtt
||  |||| |||||| |||  |  || |||||||||||||| |||||||| |||||||| || || |||  ||||||||| ||||||||||| | |||||||            |   |   | ||  |      ||  |   |  || ||||      || ||       ||||  |  | |  ||  | |     |    
GTCCTCCGCAAGAAGGCTCCCACTGCCGCCGCCAAGAAGGATGAGAAAGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttcccaaaaccctcaccgattgatcaatttattgtcttttcttcttttgtttttaaatataggatctgaacttcttgtttcttgggattattgca--

upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G42890.1 (Glycine max), 5'ss of exon 1
GTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagcctttttgtcttgctttgttttctttccccatgtttcctgtttgtttttcgagaaa-gtacttcccttgaaaattatccctgag--aaaagccgagtt---
||  |||| |||||| |||  | ||| ||||||||||||||||||||||| |||||||| || || |||   |||||||| ||||||||||| | ||| |||  |     |   |   | ||             ||  |    ||   | ||   | |   || | || | ||   ||| ||    |   | |||     |    
GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccctaaaccctcatt------caaaaaaatagtaatagtaaatcttcgaatagttgttcgtcgcgtgttgattgtcttacaattataagtttcttctaa

upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G15420.1 (Glycine max), 5'ss of exon 1
GTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagcctttttgtcttgctttgttttctttccccatgtttcctgtttgtttttcgagaaa--gtacttcccttgaaaattatccctgagaaaagccgagtt--------
||  |||| |||||| |||  | ||| ||||||||||||||||||||||| |||||||| || || |||  |||||| || || |||||||| | ||| |||  |         |   | | |            |       |  |   | |||||  |   || | || | ||   ||||||  ||| |||     | ||        
GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttcccaaaaccctcatcgaaaa--------aaaacatataataaatattcgaatagttgttcgtcgcgtgttgattatc--tgacaaatataaatttcttctcac

upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G15410.1 (Glycine max), 5'ss of exon 1
------------------------------GTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagcctttttgtcttg-ctttgttttctttccccatgtttcctgtttgtttttcgagaaagtacttcccttgaaaattatccctgagaaaagccgagtt
                              ||  |||| |||||| |||  | ||||||||| ||||||||||||||||| |||||||| || |   ||   |||   || ||| ||||||| | ||| | |     || ||| |    |  |  |    ||   || |||   ||||   ||  |||                                           
GGCCCTCTTTCTCTGGATTGGGAACCCGTCGTCCTCCGCAAGAAGGCTCCCACCGCTGCCGCTAAGAAGGACGAGAAAGCCgtcaacgccgcccaatgctctggc-ttgaaatcaaaaccctaaaaaagtat-----ttgttgccaaaaccctaatcgaattgatca-gttaattgttgtcttcacga-------------------------------------------

upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G58680.1 (Arabidopsis thaliana), 5'ss of exon 1
GTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagcctt-----tttgtcttgctttgttttctttccccatgtttcctgtttgtttttcgagaaagtacttcccttga--aaattatccctgagaaaagccgagtt
|||||||| ||||   |||  |||||||| || |||   ||||||||  |||||||||| |||||||| ||||||||||| || || ||| || ||||||||  |  ||     ||| |||  ||  || |   |   | |  |||   | ||   ||  | || | || ||| || |   |  |||    ||   |  |       
GTGATCCGCAAGAGAGCTCCTAACGCTGCAGCTAAGCGCGACGAGAAGACTGTCAACGCCGCTCGTCGAAGCGGCGCCGATATTGAGACCGTTCGAAAATgtttgttttctttctttctctatctccgtctctctgatctacctttgtagcttaagttgtgggagaatatttctctggtttaggttaaatttggcgattg-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376772|gb|EC941847.1|EC941847
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110385439|gb|EC949964.1|EC949964
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|26261774|gb|CA812837.1|CA812837
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110709567|gb|EE085139.1|EE085139
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|37189291|gb|CF608640.1|CF608640
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|71883230|gb|DT032285.1|DT032285
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110724742|gb|EE100846.1|EE100846
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110409136|gb|EC974792.1|EC974792
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|30296972|gb|CB973766.1|CB973766
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|30297030|gb|CB973824.1|CB973824
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCCCCTCTTTAAACCCAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|32269761|gb|CD718920.1|CD718920
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCTGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|352790908|gb|FQ477356.1|FQ477356
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|352790919|gb|FQ477367.1|FQ477367
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110392818|gb|EC957277.1|EC957277
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|26262403|gb|CA813466.1|CA813466
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|351027078|gb|FQ439939.1|FQ439939
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|352787307|gb|FQ477927.1|FQ477927
EST:     TGTCAACGCTGCTCGTCGCAGCGGCACCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|26261581|gb|CA812644.1|CA812644
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110702508|gb|EE081304.1|EE081304
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|71882631|gb|DT031686.1|DT031686
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGGTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110371463|gb|EC935506.1|EC935506
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|352767842|gb|FQ466051.1|FQ466051
EST:     TTTCAACGCTGCTCGTTGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         TTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110730082|gb|EE106758.1|EE106758
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110727035|gb|EE103368.1|EE103368
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110361544|gb|EC925026.1|EC925026
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110701590|gb|EE079338.1|EE079338
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110376285|gb|EC941335.1|EC941335
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110708355|gb|EE085804.1|EE085804
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110687528|gb|EE065040.1|EE065040
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110693957|gb|EE070642.1|EE070642
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|30129260|gb|CB914599.1|CB914599
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|26262731|gb|CA813794.1|CA813794
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACCACA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAA-CACA
EST: gi|34416272|gb|CF415026.1|CF415026
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110710400|gb|EE086700.1|EE086700
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|33405747|gb|CF211374.1|CF211374
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|26261632|gb|CA812695.1|CA812695
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|32270667|gb|CD719826.1|CD719826
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCTGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110406514|gb|EC972090.1|EC972090
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|71889009|gb|DT038064.1|DT038064
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110714431|gb|EE091328.1|EE091328
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110721697|gb|EE098991.1|EE098991
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110730507|gb|EE107663.1|EE107663
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110427201|gb|EC993635.1|EC993635
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|34417096|gb|CF415850.1|CF415850
EST:     GCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: GCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|33409962|gb|CF215589.1|CF215589
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|18458670|gb|BM436948.1|BM436948
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCTGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|352781833|gb|FQ469131.1|FQ469131
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|349826575|gb|FQ418666.1|FQ418666
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110411752|gb|EC977475.1|EC977475
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110707585|gb|EE084154.1|EE084154
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|46918198|gb|CN547527.1|CN547527
EST:     TGTCAACGCTGCTCGTCGCAGCGGTGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|349827889|gb|FQ422757.1|FQ422757
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110428938|gb|EC995422.1|EC995422
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110715971|gb|EE090542.1|EE090542
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|22013757|gb|BQ798791.1|BQ798791
EST:     TGTCAACGCTGCTCGTCGCAGCGGTGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|349824312|gb|FQ417723.1|FQ417723
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110701644|gb|EE079448.1|EE079448
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110707359|gb|EE083701.1|EE083701
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110360974|gb|EC924420.1|EC924420
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110706291|gb|EE081688.1|EE081688
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110687300|gb|EE064600.1|EE064600
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110383202|gb|EC947559.1|EC947559
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|22014900|gb|BQ799934.1|BQ799934
EST:     TGTCAACGCTGCTCGTCGCAGCGGTGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110687086|gb|EE064190.1|EE064190
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110387022|gb|EC951661.1|EC951661
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|110410201|gb|EC975879.1|EC975879
EST:     TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
EST: gi|22014967|gb|BQ800001.1|BQ800001
EST:     TGTCAACGCTGCTCGTCGCAGCGGTGCCGAGATCGAAACCCTTAGAAAAT                         CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA
genomic: TGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagccttt ... tctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagcctttttgtcttgctttgttttctttccccatgtttcctgtttgtttttcgagaaagtacttcccttgaaaattatccctgagaaaagccgagtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa