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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGGTCCTCAAACCCACCACCACCACCACCACCTTCCGCCGGAACACGACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcactttcccacctctgtctccacctcagatctcctccgatccacctccttatctttcattttccttaattctcacccgatctcacttttctcgc...

Basic information

species Vitis vinifera
transcript Vv12s0028g01810.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860504|gb|DT009559.1|DT009559
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|71857679|gb|DT006734.1|DT006734
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|110725002|gb|EE101323.1|EE101323
EST:     CTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: CTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|349830587|gb|FQ416885.1|FQ416885
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|351023941|gb|FQ423364.1|FQ423364
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|71862284|gb|DT011339.1|DT011339
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|71859164|gb|DT008219.1|DT008219
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|33402557|gb|CF208184.1|CF208184
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|351020144|gb|FQ445751.1|FQ445751
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|351040389|gb|FQ434522.1|FQ434522
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|352765011|gb|FQ473659.1|FQ473659
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|71863774|gb|DT012829.1|DT012829
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|110719282|gb|EE097083.1|EE097083
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|351025140|gb|FQ433557.1|FQ433557
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|71860474|gb|DT009529.1|DT009529
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|71860811|gb|DT009866.1|DT009866
EST:     ACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|351036312|gb|FQ458687.1|FQ458687
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|71854956|gb|DT004011.1|DT004011
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|71861673|gb|DT010728.1|DT010728
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
EST: gi|110718800|gb|EE096049.1|EE096049
EST:     ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAG                         GAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA
genomic: ACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcact ... tgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGGGTCCTCAAACCCACCACCACCACCACCACCTTCCGCCGGAACACGACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGgtacttcactttcccacctctgtctccacctcagatctcctccgatccacctccttatctttcattttccttaattctcacccgatctcacttttctcgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaccc