Sequence
atgc intronic sequence ATGC exonic sequenceCAGTTTTTATTGTCAGTGGAAGAGGAAGGGATAACTTAAGCCAGTGGTTTTCCCCCTGCAGGAAGCTTGGACTTGCAGCAGAACATGGTTACTTCTTAAGgtatgtgttctttcttctctttctgtctctggccactttctaggcaacatcatttaaattactgtttgcttttgtacagtcctaaattgaggggttcatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01670.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g54560.1 (Oryza sativa), 5'ss of exon 1
CAGTTTTTATTGTCAGTGGAAGAGGAAGGGATAACTTAAGCCAGTGGTTTTCCCCCTGCAGGAAGCTTGGACTTGCAGCAGAACATGGTTACTTCTTAAGgtatg-tgttctttctt----ctctttctgtctctggccactttctaggcaacatcatttaaattactgtttgcttttgtacagtcctaaattgaggggttcatt
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AAGTTTTTCTTGTCAGTGGGAGACGCAGGGACAAATTGGGAGAATGGTTTTCCTCTTGTCCAGATCTGGGCATTGCAGCAGAGCATGGTTACTTCTTAAGgtatgatatttcattttgacatttttttcgtccttagtgcaaatggtgggaataagagtgag--tgtttcttactagcatggattgtaaggataaacgatgc---
upper sequence: Vv12s0028g01670.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G123277_T01 (Zea mays), 5'ss of exon 1
CAGTTTTTATTGTCAGTGGAAGAGGAAGGGATAACTTAAGCCAGTGGTTTTCCCCCTGCAGGAAGCTTGGACTTGCAGCAGAACATGGTTACTTCTTAAGgtatgtgttctttcttctctttctgtctctggccactttctaggcaacatcatttaaattactgtttgcttttgtacagtcctaaattgaggggttcatt-----
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TCGTTTTTCTTGTCAGTGGTAGAGACAAAGATATGTTAGGAAAGTGGTTCTCCTCATGTCCAAAATTGGGGATTGCAGCTGAACATGGTTACTTCTTGAGgtatggttttccatttctgcacaagtgtatttttttgggtgaagtagttgcatctggat-actgtttttttctataa----ctagaaaaaacagtacagcggtctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708158|gb|FC057827.1|FC057827EST: TCCCCCTGCAGGAAGCTTGGACTTGCAGCAGAACATGGTTACTTCTTAAG GTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGG
genomic: TCCCCCTGCAGGAAGCTTGGACTTGCAGCAGAACATGGTTACTTCTTAAGgtatgtgttc ... aatacctcagGTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGTTTTTATTGTCAGTGGAAGAGGAAGGGATAACTTAAGCCAGTGGTTTTCCCCCTGCAGGAAGCTTGGACTTGCAGCAGAACATGGTTACTTCTTAAGgtatgtgttctttcttctctttctgtctctggccactttctaggcaacatcatttaaattactgtttgcttttgtacagtcctaaattgaggggttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga