1 5' 3' | 2 5' 3' |
TTGTGGCCGATGCCATAATCAGTCAGTTGCTGTTGTTGGACGCTCAGGACCCCACCAAGGACATCAGGCTCTTCATCAACTCCCCTGGTGGCTCCCTCAGgtacaccaacagcatttcggactagttaattttcctctttttgaaggtagaggaagacgatttgtgaaattagatggagcaatctttctggaaaaaattc...
species | Vitis vinifera |
transcript | Vv12s0028g01250.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCACCAAGGACATCAGGCTCTTCATCAACTCCCCTGGTGGCTCCCTCAG TGCTACAATGGCTATTTATGACATTGTACAGCTGGTTAGGGCAGATGTTTCEST: gi|30137048|gb|CB922386.1|CB922386
genomic: CCCACCAAGGACATCAGGCTCTTCATCAACTCCCCTGGTGGCTCCCTCAGgtacaccaac ... tttgtactagTGCTACAATGGCTATTTATGACATTGTACAGCTGGTTAGGGCAGATGTTTC
EST: CCCACCAAGGACATCAGGCTCTTCATCAACTCCCCTGGTGGCTCCCTCAG TGCTACAATGGCTATTTATGACATTGTACAGCTGGTTAGGGCAGATGTTTCEST: gi|110719754|gb|EE095158.1|EE095158
genomic: CCCACCAAGGACATCAGGCTCTTCATCAACTCCCCTGGTGGCTCCCTCAGgtacaccaac ... tttgtactagTGCTACAATGGCTATTTATGACATTGTACAGCTGGTTAGGGCAGATGTTTC
EST: CCCACCAAGGACATCAAGCTCTTCATCAACTCCCCTGGTGGCTCCCTCAG TGCTACAATGGCTATTTATGACATTGTACAGCTGGTTAGGGCAGATGTTTCEST: gi|110698253|gb|EE075581.1|EE075581
genomic: CCCACCAAGGACATCAGGCTCTTCATCAACTCCCCTGGTGGCTCCCTCAGgtacaccaac ... tttgtactagTGCTACAATGGCTATTTATGACATTGTACAGCTGGTTAGGGCAGATGTTTC
EST: CTCACCAAGGACATCAGGCTCTTCATCAACTCCCCTGGTGGCTCCCTCAG TGCTACAATGGCTATTTATGACATTGTACAGCTGGTTAGGGCAGATGTTTC
genomic: CCCACCAAGGACATCAGGCTCTTCATCAACTCCCCTGGTGGCTCCCTCAGgtacaccaac ... tttgtactagTGCTACAATGGCTATTTATGACATTGTACAGCTGGTTAGGGCAGATGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGGCCGATGCCATAATCAGTCAGTTGCTGTTGTTGGACGCTCAGGACCCCACCAAGGACATCAGGCTCTTCATCAACTCCCCTGGTGGCTCCCTCAGgtacaccaacagcatttcggactagttaattttcctctttttgaaggtagaggaagacgatttgtgaaattagatggagcaatctttctggaaaaaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat