1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTAGAATCTCTTGTACTTGTAAGTAAGCATCGATCATTCTTTCTCCAGACGCCGCTTTTCGTCGATCTCTGAGTCCAAGCTTTGAAGgtactcttccaatctccatttccaactagttcaatgggcttctagtttatatacaatcgtttgggtgctgagaaaataatgagaaaacgaaagaaaagtt...
species | Vitis vinifera |
transcript | Vv11s0149g00070.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTTTCTCCAGACGCCGCTTTTCGTCGATCTCTGAGTCCAAGCTTTGAAG GCCTCTTCCTTTCAGTTGTTGTGAGGCTTGTATTGGACTCCTTTGAAACATEST: gi|110688268|gb|EE066628.1|EE066628
genomic: TCTTTCTCCAGACGCCGCTTTTCGTCGATCTCTGAGTCCAAGCTTTGAAGgtactcttcc ... aaaatttcagGCCTCTTCCTTTCAGTTGTTGTGAGGCTTGTATTGGACTCCTTTGAAACAT
EST: CTCCAGACGCCGCTTTTCGTCGATCTCTGAGTCCAAGCTTTGAAG GCCTCTTCCTTTCAGTTGTTGTGAGGCTTGTATTGGACTCCTTTGAAACATEST: gi|110693922|gb|EE070579.1|EE070579
genomic: CTCCAGACGCCGCTTTTCGTCGATCTCTGAGTCCAAGCTTTGAAGgtactcttcc ... aaaatttcagGCCTCTTCCTTTCAGTTGTTGTGAGGCTTGTATTGGACTCCTTTGAAACAT
EST: CGATCTCTGAGTCCAAGCTTTGAAG GCCTCTTCCTTTCAGTTGTTGTGAGGCTTGTATTGGACTCCTTTGAAACAT
genomic: CGATCTCTGAGTCCAAGCTTTGAAGgtactcttcc ... aaaatttcagGCCTCTTCCTTTCAGTTGTTGTGAGGCTTGTATTGGACTCCTTTGAAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGAATCTCTTGTACTTGTAAGTAAGCATCGATCATTCTTTCTCCAGACGCCGCTTTTCGTCGATCTCTGAGTCCAAGCTTTGAAGgtactcttccaatctccatttccaactagttcaatgggcttctagtttatatacaatcgtttgggtgctgagaaaataatgagaaaacgaaagaaaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa