Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCCGACGGTGGCGGTCCACGGCTGCACAAGGCGGTCCTCTTTCTGTCTCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactatcggcataatcaaccttatctttttctaaatctctataaatggggtgtcggtttttttttcttagttatttctgaaattatctgaaatcaaaaacag

Basic information

species Vitis vinifera
transcript Vv11s0118g00780.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110726595|gb|EE102512.1|EE102512
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|110404473|gb|EC969583.1|EC969583
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|30251926|gb|CB969659.1|CB969659
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|26265459|gb|CA816522.1|CA816522
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|110691294|gb|EE069228.1|EE069228
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|30323328|gb|CD006590.1|CD006590
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|87584108|gb|DY473390.1|DY473390
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|110723758|gb|EE101436.1|EE101436
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|71886262|gb|DT035317.1|DT035317
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|30132382|gb|CB917721.1|CB917721
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|30125206|gb|CB910545.1|CB910545
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|30134113|gb|CB919451.1|CB919451
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|30321557|gb|CD004819.1|CD004819
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|30125878|gb|CB911217.1|CB911217
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|30251724|gb|CB969457.1|CB969457
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|71869695|gb|DT018750.1|DT018750
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|110391960|gb|EC957033.1|EC957033
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|71875649|gb|DT024704.1|DT024704
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|71866756|gb|DT015811.1|DT015811
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|37184267|gb|CF603621.1|CF603621
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|71873465|gb|DT022520.1|DT022520
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
EST: gi|18459703|gb|BM437981.1|BM437981
EST:     TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATG                         CAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG
genomic: TCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactat ... tcaaaaacagCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTCCGACGGTGGCGGTCCACGGCTGCACAAGGCGGTCCTCTTTCTGTCTCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGgtactactatcggcataatcaaccttatctttttctaaatctctataaatggggtgtcggtttttttttcttagttatttctgaaattatctgaaatcaaaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT