Sequence
atgc intronic sequence ATGC exonic sequenceCTCAAGAAAGGGCCTTGGACTCCTGAGGAAGACCAGAAACTTGTCAAATATATCCAGAAACAAGGCCATGGAAGCTGGAGAGCCCTCCCCAAACTTGCAGgtacaattcacacaatgaatcttttttttttttttttttcctttttctttttttgggtatctatctgtctctagcaaaaggcatgggtgttcttaattttgtcttaatttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0078g00480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G10280.1 (Arabidopsis thaliana), 5'ss of exon 1
CTCAAGAAAGGGCCTTGGACTCCTGAGGAAGACCAGAAACTTGTCAAATATATCCAGAAACAAGGCCATGGAAGCTGGAGAGCCCTCCCCAAACTTGCAGgtacaattcacacaatgaatctttttttttt-ttttttttcctttttctttttttgggtatctatctgtctctagcaaaaggcatgggtgttcttaattttgtcttaatttacag
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CTCAAGAAAGGTCCTTGGACTCCTGATGAAGATGAGAAACTTGTCAACTATGTTCAAAAACATGGTCATAGTAGCTGGAGAGCCCTTCCCAAACTCGCTGgtaatgcttttgtgttctttctttcttgaaagcttgtcttaagtctaagcttctcatgtgattctctctgtgcag----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714725|gb|FC062680.1|FC062680EST: TATCCAGAAACAAGGCCATGGAAGCTGGAGAGCCCTCCCCAAACTTGCAG GTCTTAATAGATGTGGGAAGAGTTGCAGATTAAGATGGACTAATTATTTGA
genomic: TATCCAGAAACAAGGCCATGGAAGCTGGAGAGCCCTCCCCAAACTTGCAGgtacaattca ... taatttacagGTCTTAATAGATGTGGGAAGAGTTGCAGATTAAGATGGACTAATTATTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCAAGAAAGGGCCTTGGACTCCTGAGGAAGACCAGAAACTTGTCAAATATATCCAGAAACAAGGCCATGGAAGCTGGAGAGCCCTCCCCAAACTTGCAGgtacaattcacacaatgaatcttttttttttttttttttcctttttctttttttgggtatctatctgtctctagcaaaaggcatgggtgttcttaattttgtcttaatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA