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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCAAAGAAGCCATTTTCAGTTTTCTGTGAAGGTGCCCTCCAGACGACACAATCCCTAAAAGTAAAAGgtaaacctactttcctctgccactctcaatcctcgcagttactaatctaatcatgtttttgatttttttctttgcaacccctgtttgattcccaagaaaa...

Basic information

species Vitis vinifera
transcript Vv11s0078g00440.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34547849|gb|CF516081.1|CF516081
EST:     TTTTCTCTGAAGGTGCCCTCCAGACGACACAATCCCTACCATG-AAAAG                         GTGAGGAATTTAATGAATCTTTGAGACATTATCAACCAGTGCTCAGTTGGA
genomic: TTTTCTGTGAAGGTGCCCTCCAGACGACACAATCCCTA-AAAGTAAAAGgtaaacctac ... tcaatttcagGTGAGGAATTTAATGAATCTTTGAGACATTATCAACCAGTGCTCAGTTGGA
EST: gi|34550860|gb|CF519076.1|CF519076
EST:     ATCCCTAAAAGTAAAAG                         GTGAGGAATTTAACGAATCTTTGAGACATTATCAACCAGTGCTCAGTTGGA
genomic: ATCCCTAAAAGTAAAAGgtaaacctac ... tcaatttcagGTGAGGAATTTAATGAATCTTTGAGACATTATCAACCAGTGCTCAGTTGGA
EST: gi|33406110|gb|CF211737.1|CF211737
EST:     AGTTTTCTCTGAAGGTGCCCTCCAGACGACACAATCCCTAAAAGTAAAAG                         GTGAGGAATTTAATGAATCTTTGAGACATTATCAACCAGTGCTCAGTTGGA
genomic: AGTTTTCTGTGAAGGTGCCCTCCAGACGACACAATCCCTAAAAGTAAAAGgtaaacctac ... tcaatttcagGTGAGGAATTTAATGAATCTTTGAGACATTATCAACCAGTGCTCAGTTGGA
EST: gi|34547927|gb|CF516159.1|CF516159
EST:     AGTTTTCTCTGAAGGTGCCCTCCAGACGACACAATCCCTAAAAGTAAAAG                         GTGAGGAATTTAATGAATCTTTGAGACATTATCAACCAGTGCTCAGTTGGA
genomic: AGTTTTCTGTGAAGGTGCCCTCCAGACGACACAATCCCTAAAAGTAAAAGgtaaacctac ... tcaatttcagGTGAGGAATTTAATGAATCTTTGAGACATTATCAACCAGTGCTCAGTTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGCAAAGAAGCCATTTTCAGTTTTCTGTGAAGGTGCCCTCCAGACGACACAATCCCTAAAAGTAAAAGgtaaacctactttcctctgccactctcaatcctcgcagttactaatctaatcatgtttttgatttttttctttgcaacccctgtttgattcccaagaaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagaaa