1 5' 3' | 2 5' 3' | 3 5' 3' |
ATCTGGTTTCCAGTCCAAGAACGAGTATCTGTTTGGCAAGATTGATATGCAGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTATgtaagcccgcctttcatagtacttgttgcacatcatcctccatttgatgacaatttgttctcctgattagtatatagttcttatttatgtatgtgtgtatttgcag
species | Vitis vinifera |
transcript | Vv11s0052g01180.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTAT TTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGCEST: gi|71859609|gb|DT008664.1|DT008664
genomic: AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTATgtaagcccgc ... gtatttgcagTTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
EST: AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTAT TTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGCEST: gi|71869843|gb|DT018898.1|DT018898
genomic: AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTATgtaagcccgc ... gtatttgcagTTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
EST: AGCTCAAATTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTAT TTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGCEST: gi|161716729|gb|FC065576.1|FC065576
genomic: AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTATgtaagcccgc ... gtatttgcagTTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
EST: AGCTCAAATTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTAT TTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
genomic: AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTATgtaagcccgc ... gtatttgcagTTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGGTTTCCAGTCCAAGAACGAGTATCTGTTTGGCAAGATTGATATGCAGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTATgtaagcccgcctttcatagtacttgttgcacatcatcctccatttgatgacaatttgttctcctgattagtatatagttcttatttatgtatgtgtgtatttgcag
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