Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccgaaaaaaatactttattctgatctttgttttatgttctttagatctgtgattcgagtaatcatatgatttctatgtcttgaaatcttatact...

Basic information

species Vitis vinifera
transcript Vv11s0052g00290.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868080|gb|DT017135.1|DT017135
EST:     AAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351043525|gb|FQ430999.1|FQ430999
EST:     GAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: GAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110722112|gb|EE098055.1|EE098055
EST:     CTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|349812134|gb|FQ410931.1|FQ410931
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351012206|gb|FQ426928.1|FQ426928
EST:     AAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351013753|gb|FQ433905.1|FQ433905
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110725716|gb|EE102533.1|EE102533
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110685837|gb|EE062904.1|EE062904
EST:     AAACCCTTGCCTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGCCTCCAGAATCGGTG
genomic: AAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351014510|gb|FQ437512.1|FQ437512
EST:     AAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|77580651|gb|DV219229.1|DV219229
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110722869|gb|EE099531.1|EE099531
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|26266801|gb|CA817864.1|CA817864
EST:     AAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|37188941|gb|CF608290.1|CF608290
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|87584219|gb|DY473459.1|DY473459
EST:     AAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|33407532|gb|CF213159.1|CF213159
EST:     AAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351032161|gb|FQ460418.1|FQ460418
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|71875336|gb|DT024391.1|DT024391
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110389408|gb|EC954242.1|EC954242
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACCGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|161720606|gb|FC070216.1|FC070216
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351019405|gb|FQ429540.1|FQ429540
EST:     AAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351015300|gb|FQ445584.1|FQ445584
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351024712|gb|FQ433127.1|FQ433127
EST:     AAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351044035|gb|FQ431466.1|FQ431466
EST:     AAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351030503|gb|FQ436929.1|FQ436929
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|34548001|gb|CF516233.1|CF516233
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351015964|gb|FQ431919.1|FQ431919
EST:     AAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110699001|gb|EE077139.1|EE077139
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110702119|gb|EE080467.1|EE080467
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110709244|gb|EE084536.1|EE084536
EST:     CTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|161719021|gb|FC067641.1|FC067641
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|30304884|gb|CB981678.1|CB981678
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351016367|gb|FQ446227.1|FQ446227
EST:     CGAAAACCCTCGCTCCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110397494|gb|EC963234.1|EC963234
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|34548504|gb|CF516736.1|CF516736
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGACGGTTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351029873|gb|FQ427713.1|FQ427713
EST:     AAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351037576|gb|FQ462559.1|FQ462559
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGATAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351021842|gb|FQ437227.1|FQ437227
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|77582255|gb|DV220090.1|DV220090
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|87584426|gb|DY473609.1|DY473609
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351029733|gb|FQ427573.1|FQ427573
EST:     GAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: GAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110700689|gb|EE077563.1|EE077563
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|29784736|gb|CB345836.2|CB345836
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|349826288|gb|FQ416093.1|FQ416093
EST:     GAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: GAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351042582|gb|FQ431180.1|FQ431180
EST:     AAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110429780|gb|EC996285.1|EC996285
EST:     GAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: GAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110703700|gb|EE080774.1|EE080774
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|161720911|gb|FC070321.1|FC070321
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351028634|gb|FQ446307.1|FQ446307
EST:     AAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351029952|gb|FQ430694.1|FQ430694
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|26263687|gb|CA814750.1|CA814750
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|161711628|gb|FC061265.1|FC061265
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|33405893|gb|CF211520.1|CF211520
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351030952|gb|FQ438988.1|FQ438988
EST:     AAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|349824683|gb|FQ413350.1|FQ413350
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGGGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351014750|gb|FQ437950.1|FQ437950
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|294966341|gb|GW837592.1|GW837592
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351032451|gb|FQ458816.1|FQ458816
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|110379121|gb|EC944297.1|EC944297
EST:     CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACG                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
EST: gi|351048122|gb|FQ442092.1|FQ442092
EST:     AAACCCTCGCTTCAGCGCCAGCTACAGGACA                         AGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG
genomic: AAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccga ... ctgattttagAGAGAGATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAAAACCCTCGCTTCAGCGCCAGCTACAGGACGgtgagtccgaaaaaaatactttattctgatctttgttttatgttctttagatctgtgattcgagtaatcatatgatttctatgtcttgaaatcttatact

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa