Sequence
atgc intronic sequence ATGC exonic sequenceTGGGCTGTTCTTAAACGCGGTGTTAGAGGTTCCTGCAAGTCCTCTGCTTCTAGGGATTCTGTTAACACTATTCCTCGGACCAGTCTCGTTTATGATGCTGgtattgttatttggatttgattctcacggttatcttgttgcttctcaagctttctttgtgggatccttctgttttttcaagattttgaggtctagtgttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G22790.1 (Glycine max), 5'ss of exon 1
TGGGCTGTTCTTAAACGCGGTGTTAGAGGTTCCTGCAAGTCCTCTGCTTCTAGGGATTCTGTTAACACTATTCCTCGGACCAGTCTCGTTTATGATGCTGgtattgttatttggatttgattctcacggttatcttg--ttgcttctcaagctttctttgtgggatccttctgttttttcaagattttgaggtctagtgttt
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TGGGCTGTCCTCAAACGCGGCGTTAGAGGTGCGTGCAAACCTTCAGCTTCCAGAGACTCTCCTAACACTATCCCTCGAACTAGTCTCGTTTATGATGCAGgtacatatactctgtttccacgctggaaacaaaattcactctgttttctcccttcttcattgtgaatctcaaaaactagcgtgatgccaccctctctcaa--
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G12060.1 (Glycine max), 5'ss of exon 1
TGGGCTGTTCTTAAACGCGGTGTTAGAGGTTCCTGCAAGTCCTCTGCTTCTAGGGATTCTGTTAACACTATTCCTCGGACCAGTCTCGTTTATGATGCTGgtattgttatttggatttgattctcacggttatcttgttgcttctcaagctttctttgtgggatccttctgttttttcaagattttgaggtctagtgttt------------------------------------------------
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--------------------------------------------AGCTTCCAGAGACTCTCCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGGTAC----ATATACCCTCTGTTTCCACGATGGAAACAAAATTCACTCTgttttctctcctccttcattgtgaatctaaaaaatagcctagtgtcatgccaccctctctcaaatgctccatttgagtcttttcccgctatacgagtcttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71856918|gb|DT005973.1|DT005973EST: TAGGGATTCTGTTAACACTATTCCTCGGACCAGTCTCGTTTATGATGCTG CCACTGAGACGCGATATCTAAACGCAAGTAACCGGGAGCTCTATGCTCCGA
genomic: TAGGGATTCTGTTAACACTATTCCTCGGACCAGTCTCGTTTATGATGCTGgtattgttat ... gtctgtgcagCCACTGAGACGCGATATCTAAACGCAAGTAACCGGGAGCTCTATGCTCCGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGCTGTTCTTAAACGCGGTGTTAGAGGTTCCTGCAAGTCCTCTGCTTCTAGGGATTCTGTTAACACTATTCCTCGGACCAGTCTCGTTTATGATGCTGgtattgttatttggatttgattctcacggttatcttgttgcttctcaagctttctttgtgggatccttctgttttttcaagattttgaggtctagtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG