Sequence
atgc intronic sequence ATGC exonic sequenceGCTGCTGCTGCTGAGGAATTTGTCAAGGGAAATGTTCATCCAAATGGCGTTGCTGTGATAACTCTTGATCGCCCCAAGGCTCTCAATGCTATGAACCTAGgtttggttttctcatgttttccttgttccatctcttaaagcacatcatttgttcgttttggattaggatgattgcatttgatcgagtgttcgttgctgaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G04460.1 (Glycine max), 5'ss of exon 1
GCTGCTGCTGCTGAGGAATTTGTCAAGGGAAATGTTCATCCAAATGGCGTTGCTGTGATAACTCTTGATCGCCCCAAGGCTCTCAATGCTATGAACCTAGgtttggttttctcatgttttccttgttccatctcttaaagcacatcatttgttcgtt--ttggattaggatgattgcatttg--atcgagtgttcgttgctgaa--
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TCCGCTATGGCCGAAGAATTTGTGAAGGGCTCTGTTCATCAAAACGGCGTCGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttt------tccatattcttcttcgtttccgtaattatgtatgctattaagttgagaattgtcttcggagatttgcttttggaatctggactgttttgttgaact
upper sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G35260.1 (Glycine max), 5'ss of exon 1
GCTGCTGCTGCTGAGGAATTTGTCAAGGGAAATGTTCATCCAAATGGCGTTGCTGTGATAACTCTTGATCGCCCCAAGGCTCTCAATGCTATGAACCTAGgtttggttttctcatgttttccttgttccatctcttaaagcacatcatttgttcgtt--ttggattaggatgattgcatttg--atcgagtgttcgttgctgaa--
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TCCGCTATGGCCGAAGAATTTGTGAAGGGCACTGTTCATCAAAACGGCGTCGCTGTCATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttt------ttcattttcttcttcttttccataattatgcatgctattaagttgagaattgtgttcggagattttcttttggaatctggactgtttagttgaactMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708081|gb|FC056485.1|FC056485EST: TGCTGTGATAACTCTTGATCGCCCCAAGGCTCTCAATGCTATGAACCTAG ATATGGATATAAGATACAAAAAATTTCTTGATGAATGGGAAATGG
genomic: TGCTGTGATAACTCTTGATCGCCCCAAGGCTCTCAATGCTATGAACCTAGgtttggtttt ... taatgtgtagATATGGATATAAGATACAAAAAATTTCTTGATGAATGGGAAATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGCTGCTGCTGAGGAATTTGTCAAGGGAAATGTTCATCCAAATGGCGTTGCTGTGATAACTCTTGATCGCCCCAAGGCTCTCAATGCTATGAACCTAGgtttggttttctcatgttttccttgttccatctcttaaagcacatcatttgttcgttttggattaggatgattgcatttgatcgagtgttcgttgctgaa
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagcaca