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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGTTTGTTGTTCTTCTCATCCTCAAAGACACCACAAGCCTACATGGATTTCATACAAACGCTCCGTTTTGAGCTCAATCACTCCCAAATCTGCTTCAGgtaagcaagcccaaaacttcatttcagtttatttataactgcacctacaaaaaccgtttttgtttgtactttgtaccatgtgtttggccatattttgaca...

Basic information

species Vitis vinifera
transcript Vv11s0016g04250.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352777419|gb|FQ474053.1|FQ474053
EST:     TTCATACAAACGCTCCGTTTTGAGCTCAATCACTCCCAAATCTGCTTCAG                         CTAGTACTTCTGCCATATCAAGTGGAACAGCTGAGGCCGATGTATTGAAAG
genomic: TTCATACAAACGCTCCGTTTTGAGCTCAATCACTCCCAAATCTGCTTCAGgtaagcaagc ... ttatttgtagCTAGTACTTCTGCCATATCAAGTGGAACAGCTGAGGCCGATGTATTGAAAG
EST: gi|352773640|gb|FQ472422.1|FQ472422
EST:     TTCATACAAACGCTCCGTTTTGAGCTCAATCACTCCCAAATCTGCTTCAG                         CTAGTACTTCTGCCATATCAAGTGGAACAGCTGAGGCCGATGTATTGAAAG
genomic: TTCATACAAACGCTCCGTTTTGAGCTCAATCACTCCCAAATCTGCTTCAGgtaagcaagc ... ttatttgtagCTAGTACTTCTGCCATATCAAGTGGAACAGCTGAGGCCGATGTATTGAAAG
EST: gi|352764180|gb|FQ471160.1|FQ471160
EST:     TTCATACAAACGCTCCGTTTTGAGCTCAATCGCTCACAAATCTGCTTCAG                         CTAGTACTTCTGCGATATCAAGTGGAACAACTGAGGCCGATGTATTGAAAG
genomic: TTCATACAAACGCTCCGTTTTGAGCTCAATCACTCCCAAATCTGCTTCAGgtaagcaagc ... ttatttgtagCTAGTACTTCTGCCATATCAAGTGGAACAGCTGAGGCCGATGTATTGAAAG
EST: gi|352776504|gb|FQ474806.1|FQ474806
EST:     TTCATACAAACGCTCCGTTTTGAGCTCAATCACTCCCAAATCTGCTTCAG                         CTAGTACTTCTGCCATATCAAGTGGAACAGCTGAGGCCGATGTATTGAAAG
genomic: TTCATACAAACGCTCCGTTTTGAGCTCAATCACTCCCAAATCTGCTTCAGgtaagcaagc ... ttatttgtagCTAGTACTTCTGCCATATCAAGTGGAACAGCTGAGGCCGATGTATTGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCGTTTGTTGTTCTTCTCATCCTCAAAGACACCACAAGCCTACATGGATTTCATACAAACGCTCCGTTTTGAGCTCAATCACTCCCAAATCTGCTTCAGgtaagcaagcccaaaacttcatttcagtttatttataactgcacctacaaaaaccgtttttgtttgtactttgtaccatgtgtttggccatattttgaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaa