Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATCTCCGGCAGATCTTCGATAATGGAACGGATCGTCGGCGGAAAGTACAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttcccgattcggtgtttcttccttcgattctgttcgctttcgttgatgtttgctcatgtggaagatttgatctttttgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g03460.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71861603|gb|DT010658.1|DT010658
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGCAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|71859743|gb|DT008798.1|DT008798
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|71857582|gb|DT006637.1|DT006637
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|71859339|gb|DT008394.1|DT008394
EST:     CAAGCTAGGGCGCAAGATTGACAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|71864348|gb|DT013403.1|DT013403
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAGGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|71859319|gb|DT008374.1|DT008374
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|71864880|gb|DT013935.1|DT013935
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|32250210|gb|CD716029.1|CD716029
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|71858976|gb|DT008031.1|DT008031
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|71863788|gb|DT012843.1|DT012843
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|294965830|gb|GW837313.1|GW837313
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|110702369|gb|EE081005.1|EE081005
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGAACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|352781444|gb|FQ468288.1|FQ468288
EST:     GCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: GCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|71855998|gb|DT005053.1|DT005053
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|71861658|gb|DT010713.1|DT010713
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|27580104|gb|CB002799.1|CB002799
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|352768395|gb|FQ469571.1|FQ469571
EST:     GCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: GCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
EST: gi|110710321|gb|EE086552.1|EE086552
EST:     CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCG                         CTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT
genomic: CAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttccc ... ctttttgcagCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGATCTCCGGCAGATCTTCGATAATGGAACGGATCGTCGGCGGAAAGTACAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGgtcagttcccgattcggtgtttcttccttcgattctgttcgctttcgttgatgtttgctcatgtggaagatttgatctttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA