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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACGGGAAATGGAAAATCGGGGGCAGAGCTTTTCAGTGCTCAACTGTATTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttgtatccaagctcctccgtttggttgccgagaaaggagaaagaaggaagggaagggagaaagagaagaaaactttttaatcttagtttgtgctttgtggttcag

Basic information

species Vitis vinifera
transcript Vv11s0016g03200.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860593|gb|DT009648.1|DT009648
EST:     TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|71862772|gb|DT011827.1|DT011827
EST:     TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|71861743|gb|DT010798.1|DT010798
EST:     TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|71862499|gb|DT011554.1|DT011554
EST:     TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|71861630|gb|DT010685.1|DT010685
EST:     TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|71864491|gb|DT013546.1|DT013546
EST:     TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|71864483|gb|DT013538.1|DT013538
EST:     TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|71863373|gb|DT012428.1|DT012428
EST:     TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|294965788|gb|GW839243.1|GW839243
EST:     TTGATCTCTCCAGTCCAGACATTCACCAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|71865183|gb|DT014238.1|DT014238
EST:     TTGATCTCTCCTGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|71864565|gb|DT013620.1|DT013620
EST:     TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|110690968|gb|EE068534.1|EE068534
EST:     TTGATCTCTCCTGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|110404543|gb|EC969762.1|EC969762
EST:     TTGATCTCTCCTGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
EST: gi|71863525|gb|DT012580.1|DT012580
EST:     TTGATCTCTCCTGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAG                         GCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG
genomic: TTGATCTCTCCAGTCCAGACATTCACAAATCCGTTTCTTTACTCAAGCAGgtgcgttttg ... tgtggttcagGCATGTTTGGATTCTGGATTCTTCTATGTGATCAATCACGGAATCAGCCAG