Sequence
atgc intronic sequence ATGC exonic sequenceGGGGGTGAAGTCAAGGAAGTGGAGGCACCGGCGGAGCCTCTGGAGTGGAGGTTCTCTCAGGTGTTCGGGGAGCGGACGGCGGGGGAGGAAGTTCAGGAAGgtatatatcgcctctcatttctctgatccgtttgattgaagcggtttttgttggttttgatatggattggtgtggattttgggatttgttgttgatctgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 1
--GGGGGTGAAGTCAAGGAAGTGGAGGCACCGGCGGAGCCTCTGGAGTGGAGGTTCTCTCAGGTGTTCGGGGAGCGGACGGCGGGGGAGGAAGTTCAGGAAGgta------tatatcgcctctcatttctctgatccgtttgattgaagcggtttttgttggttttgatatggattggtgtggattttgggatttgttgttgatctgt
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GCGGCGGCGTCGTCCCCG--GCACAGGCTTCGCCTTCGCCGCCCGAGTGGAGGTTCTCGCAGGTGTTCGGCGAGCGCAGCGCTGGGGAGGAGGTCCAGGATGgtaagacgatccatcgcttgtcccctctcggcccctctcgtcgtcgtgggttttttttttaatttttttggggcgctctgggtgctgctagctgctg--gat----
upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 1
GGGGGTGAAGTCAAGGAAGTGGAGGCACCGGCGGAGCCTCTGGAGTGGAGGTTCTCTCAGGTGTTCGGGGAGCGGACGGCGGGGGAGGAAGTTCAGGAAGgt----atatatcgcctc---tcatttctctgatccgtttgattgaagcggtttttgttggttttgatatggattggtgtggattttgggatttgttgttgatctgt
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GCGGAGGCGGCGAGGCGGCCGCAGCCGCAGCCGCAGCCGCGGGAGTGGCGGTTCGCGCAGGTCTTCGGGGAACGCGCGGCGGGGGAGGACGTGCAGGAAGgtgagaacgcgccgacccgcccccttccgctgctcgccgcgtgcgtcgcgtggctcgtgagatctgcctcggtccggggcgggatgtgggag--ggtttcga-----
upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 1
GGGGGTGAAGTCAAGGAAGTGGAGGCACCGGCGGAGCCTCTGGAGTGGAGGTTCTCTCAGGTGTTCGGGGAGCGGACGGCGGGGGAGGAAGTTCAGGAAGgtatatatcg--cctctcatttctctgatccgtttgattgaagcggtttttgttggttttgatatggattggtgtggattttgggatttgttgtt-gatctgt
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CAGGCCCAGGCGCCGCCGTCGCCCTCTCCGGCTCAGCCGCTCGAGTGGAGGTTCTCCCAGGTGTTCGGTGAGCGCAGCGCCGGGGAGGAAGTCCAGGAAGgtaccgatcgatcccttctactccatgtcctgcgcctttgtgtcactcgttgttgctgcctgc-tggatcttagtgc-ttctgtgctccggagctcggtcgg-
upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 1
GGGGGTGAAGTCAAGGAAGTGGAGGCACCGGCGGAGCCTCTGGAGTGGAGGTTCTCTCAGGTGTTCGGGGAGCGGACGGCGGGGGAGGAAGTTCAGGAAGgtatatatcg------cctctcatttctctgatccgtttgattgaagcggtttttgttggttttgatatggattggtgtggattttgggatttgttgttgatctgt
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CAGGCCCAGGCGCCTCCGTCGCCATCTCCGACTCAGCCGCTCGAGTGGAGGTTCTCGCAGGTGTTCGGTGAGCGCAGCGCCGGGGAGGAAGTCCAGGATGgtaccgatcgatcccttctcctactccagtgtcctgcgcctttgtgtcactcgttgctgctacctgc-tggatcttagtgc-ttctgtgctccggagctcgg----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27755257|gb|CB036012.1|CB036012EST: GTTCTCTCAGGTGTTCGGGGAGCGGACGGCGGGGGAGGAAGTTCAGGAAG TTGACATCATTTCTGCTATTGAGTTTGACAAAACTGGAGACCATCTTGCGA
genomic: GTTCTCTCAGGTGTTCGGGGAGCGGACGGCGGGGGAGGAAGTTCAGGAAGgtatatatcg ... tgttttgcagTTGACATCATTTCTGCTATTGAGTTTGACAAAACTGGAGACCATCTTGCGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGGTGAAGTCAAGGAAGTGGAGGCACCGGCGGAGCCTCTGGAGTGGAGGTTCTCTCAGGTGTTCGGGGAGCGGACGGCGGGGGAGGAAGTTCAGGAAGgtatatatcgcctctcatttctctgatccgtttgattgaagcggtttttgttggttttgatatggattggtgtggattttgggatttgttgttgatctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA