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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGTCCCTATGATAGACTTTGATAAGCTTGATGGTGAGAAAAGGGCTGAAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAGgtaatgagaagagatttcatttagattgaaactttgttctgagctttgttctaatagctgtgatgattaatatctgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g02380.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161707383|gb|FC056880.1|FC056880
EST:     AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAG                         ATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
genomic: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAGgtaatgagaa ... atatctgcagATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
EST: gi|161720580|gb|FC069908.1|FC069908
EST:     AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAG                         ATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTG-A-CACTTA
genomic: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAGgtaatgagaa ... atatctgcagATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
EST: gi|161710001|gb|FC058083.1|FC058083
EST:     AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAG                         ATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
genomic: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAGgtaatgagaa ... atatctgcagATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
EST: gi|161720795|gb|FC070303.1|FC070303
EST:     AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAG                         ATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
genomic: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAGgtaatgagaa ... atatctgcagATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGTCCCTATGATAGACTTTGATAAGCTTGATGGTGAGAAAAGGGCTGAAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAGgtaatgagaagagatttcatttagattgaaactttgttctgagctttgttctaatagctgtgatgattaatatctgcag

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