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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATTTGAGGTTGTGACCGGAGCTGCAAAGAAACAAGTGAAGGAGAAGTCATCAGTTTCAAACCATAGCAGCAACAAATCCAAGTCAAAATCAAAAGTGgtaagtttttttgggagaattgtgctttgaggtcagtttgggactgataaatgataaatgaatgaggagtattagttatctagtgtcaaatattgtcttg...

Basic information

species Vitis vinifera
transcript Vv11s0016g01630.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G07970.1 (Glycine max), 5'ss of exon 4
------AATATTTGAGGTTGTGACCGGAGCTGCAAAGAAACAAGTGAAGGAGAAGTCATCAGTTTCAAACCATAGCAGCAACAAATCCAAGTCAAAATCAAAAGTGgtaagt----ttttttgggagaattgtgctt--tgaggtcagtttgggactgataaatgataaatgaatgaggagtatta-gttatctagtgtcaaatattgtcttg
      ||||||||||||||| || ||| |||||||||||||    ||||||||||||||||      |  | |   |||||||||| ||||| |  ||||||| ||||||       | |||  | |  ||  | |  |    |   | ||||  |  | ||    |  |  |  |  |  |||    ||| || ||   | |  |      
GCCTACAATATTTGAGGTTGTAACTGGATCTGCAAAGAAACAGACAAAGGAGAAGTCATCAG------AGAACAATGGCAACAAATCAAAGTCCAGTTCAAAAGGGgtaagaaaaacatcttgttacatctgcacatccttgtatttttctgggtttttttaaaatcatttttaatatcataattgtactatttattgctca-tgct------