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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAAAACAAAACCAACACAGGGTTGGAGGCTGGAACGCAATTCCAACAGTCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGAgtaggtgcagctttacggatgttgttcttcatagtattcatagttccacgagttacttgaatttttgcttttcttttatttatttttag

Basic information

species Vitis vinifera
transcript Vv11s0016g00830.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110719863|gb|EE095357.1|EE095357
EST:     TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGG-ATTAGGGTTGCGA                         GCTTTACTGAGTTCAAATCAATGGCGGATTCCAACTCCAAACATCAGGATT
genomic: TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGAgtaggtgcag ... ttatttttagGCTTTACTGAGTTCAAATCAATGGCGGATTCCAACTCCAAACATCAGGATT
EST: gi|30252087|gb|CB968726.1|CB968726
EST:     TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGA                         GCTTTACTGAGTTCAAATCAATGGTGGATTCCAACTCCAAACATCAGGATT
genomic: TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGAgtaggtgcag ... ttatttttagGCTTTACTGAGTTCAAATCAATGGCGGATTCCAACTCCAAACATCAGGATT
EST: gi|71856942|gb|DT005997.1|DT005997
EST:     TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGA                         GCTTTACTGAGTTCAAATCAATGGTGGATTCCAACTCCAAACATCAGGATT
genomic: TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGAgtaggtgcag ... ttatttttagGCTTTACTGAGTTCAAATCAATGGCGGATTCCAACTCCAAACATCAGGATT
EST: gi|71864847|gb|DT013902.1|DT013902
EST:     TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGA                         GCTTTACCGAGTTCAAATCAATGGCGGATTCCGACTCCAAACATCAGGATT
genomic: TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGAgtaggtgcag ... ttatttttagGCTTTACTGAGTTCAAATCAATGGCGGATTCCAACTCCAAACATCAGGATT
EST: gi|71864848|gb|DT013903.1|DT013903
EST:     TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGA                         GCTTTACCGAGTTCAAATCAATGGCGGATTCCGACTCCAAACATCAGGATT
genomic: TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGAgtaggtgcag ... ttatttttagGCTTTACTGAGTTCAAATCAATGGCGGATTCCAACTCCAAACATCAGGATT
EST: gi|161721519|gb|FC070079.1|FC070079
EST:     GAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGA                         GCTTTACTGAGTTCAAATCAATGGTGGATTCCAACTCCAAACATCAGGATT
genomic: GAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGAgtaggtgcag ... ttatttttagGCTTTACTGAGTTCAAATCAATGGCGGATTCCAACTCCAAACATCAGGATT
EST: gi|110707370|gb|EE083712.1|EE083712
EST:     TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGG-ATTAGGGTTGCGA                         GCTTTACTGAGTTCAAATCAATGGCGGATTCCAACTCCAAACATCAGGATT
genomic: TCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGAgtaggtgcag ... ttatttttagGCTTTACTGAGTTCAAATCAATGGCGGATTCCAACTCCAAACATCAGGATT