1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTCTCAATCGAAAACCTAAGCTAATCCCTCAGGTAGAGAAGGCAGGGCGATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAGgtaggctacttgtttccccttttcattctttcttcttaattttctcttcttttcttttattttgctgttttgccctaatgagaaagagagggtgagtaac...
species | Vitis vinifera |
transcript | Vv11s0016g00400.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAG TAGGATAATCCTTTATTGGAATTTATCACACGCATGGCTACGTCCCAGGGGEST: gi|33404416|gb|CF210043.1|CF210043
genomic: ATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAGgtaggctact ... gaaactgcagTAGGATAATCCTTTATTGGAATTTATCACACGCATGGCTACGTCCCAGGGG
EST: ATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAG TAGGATAATCCTTTATTGGAATTTATCACACGCATGGCTACGTCCCAGGGGEST: gi|161708625|gb|FC060446.1|FC060446
genomic: ATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAGgtaggctact ... gaaactgcagTAGGATAATCCTTTATTGGAATTTATCACACGCATGGCTACGTCCCAGGGG
EST: ATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAG TAGGATAATCCTTTATTGGAATTTATCACACGCATGGCTACGTCCCAGGGGEST: gi|161718015|gb|FC067569.1|FC067569
genomic: ATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAGgtaggctact ... gaaactgcagTAGGATAATCCTTTATTGGAATTTATCACACGCATGGCTACGTCCCAGGGG
EST: ATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAG TAGGATAATCCTTTATTGGAATTTATCACACGCATGGCTACGTCCCAGGGGEST: gi|110371035|gb|EC934744.1|EC934744
genomic: ATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAGgtaggctact ... gaaactgcagTAGGATAATCCTTTATTGGAATTTATCACACGCATGGCTACGTCCCAGGGG
EST: ATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAG TAGGATAATCCTTTATTGGAATTTATCACACGCATGGCTACGTCCCAGGGG
genomic: ATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAGgtaggctact ... gaaactgcagTAGGATAATCCTTTATTGGAATTTATCACACGCATGGCTACGTCCCAGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTCAATCGAAAACCTAAGCTAATCCCTCAGGTAGAGAAGGCAGGGCGATTGAAGTTATCTTGAAATCATTTGCAGGATTCACTATTTTATATTTGAGgtaggctacttgtttccccttttcattctttcttcttaattttctcttcttttcttttattttgctgttttgccctaatgagaaagagagggtgagtaac
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtgag