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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCCCCGGACTCCGGTAGAAGTCGTCCGTCAAACGCGTGATCTCCTCATCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattcttgcatccagcgcaatttggttttgtttccgttctttaagttgtctttttatccgattcagtaggggccgtcacagattcctggtttgac...

Basic information

species Vitis vinifera
transcript Vv10s0405g00020.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862887|gb|DT011942.1|DT011942
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|110709185|gb|EE084422.1|EE084422
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|110718449|gb|EE095298.1|EE095298
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|161711776|gb|FC058722.1|FC058722
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGT
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGT
EST: gi|161720393|gb|FC070185.1|FC070185
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|161714917|gb|FC064539.1|FC064539
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|161715770|gb|FC066174.1|FC066174
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|110712226|gb|EE089603.1|EE089603
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|33403466|gb|CF209093.1|CF209093
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|110722059|gb|EE097960.1|EE097960
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|110699863|gb|EE077248.1|EE077248
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|110712662|gb|EE087902.1|EE087902
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: gi|110696026|gb|EE074715.1|EE074715
EST:     TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG                         ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGCCCCGGACTCCGGTAGAAGTCGTCCGTCAAACGCGTGATCTCCTCATCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattcttgcatccagcgcaatttggttttgtttccgttctttaagttgtctttttatccgattcagtaggggccgtcacagattcctggtttgac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA