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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGAATTGGATGCCAGATGCCCTGAAAATGCCAGAACCTGAGCTTATTGAACATGCAGGATTAGATTCTGCTGTCTACTTGCGTATTTACTTGATAGGgtatggatctcaatatgtcatctattttgtttttcttccagttgcttgttattagttaagctgtcatcagtgcttgtagctccataattgctggttgcat...

Basic information

species Vitis vinifera
transcript Vv10s0116g00940.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G10490.1 (Glycine max), 5'ss of exon 2
TTCTGAATTGGATGCCAGATGCCCTGAAAATGCCAGAACCTGAGCTTATTGAACATGCAGGATTAGATTCTGCTGTCTACTTGCGTATTTACTTGATAGGgtatggatctcaatatgtcatctattttgtttttcttccagttgcttgttattagttaagctgtcatcagtgcttgtagctccataattgctggttgcat
 | |||||||||||||||| || || | |||||||||||||||||||||||| ||||| ||||| || |||||||| ||| |||| ||||||||||||||||||| ||    |    | |      |     |||  | | |    |  || |  |  |  |||  |  || ||| |    |                  
CTTTGAATTGGATGCCAGAAGCACTTAGAATGCCAGAACCTGAGCTTATTGACCATGCTGGATTGGACTCTGCTGTTTACCTGCGGATTTACTTGATAGGgtatgtat---gaagcattaagcgaatgacacttcagcaaatca--taatactgttctaa-tgttttttgttcttattatgcag----------------

upper sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 2
TTCTGAATTGGATGCCAGATGCCCTGAAAATGCCAGAACCTGAGCTTATTGAACATGCAGGATTAGATTCTGCTGTCTACTTGCGTATTTACTTGATAGGgtatggatctcaatatgtcatctattttgtttttcttccagttgcttgttattagttaagctgtcatcagtgcttgtagctccataattgctggttgcat
|| ||||||||||||||| ||| || | |||||| ||||| || || ||||| ||||| ||||| || |||| ||| |||||| | ||||||||||||||||||| |     | |    |   | |   |  | | ||    | |     || || | ||  |  ||  |  |||| || |   |  ||      |||| 
TTTTGAATTGGATGCCAGCTGCACTTAGAATGCCGGAACCCGAACTCATTGACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGGgtatgaactatga-acaaaaatgagtgaatactacatc--actac-----atcagctgaggaga-atatgatcttgaagttttctgtttctgttatgcag

upper sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G01400.1 (Glycine max), 5'ss of exon 1
TTCTGAATTGGATGCCAGATGCCCTGAAAATGCCAGAACCTGAGCTTATTGAACATGCAGGATTAGATTCTGCTGTCTACTTGCGTATTTACTTGATAGGgtatggatctcaatatgtcatctattttgtttttcttccagttgcttgttat-tagttaagctgtcatcagtgcttgtagctccataattgctggttgcat
|| ||||||||||||||| ||| || | |||||| |||| ||| || ||||| ||||| ||||| || |||| ||| |||||| | ||||||||| | ||||||| |     |    | |   |      |       ||| ||      || |  |   | | |  || ||   |||    |                  
TTTTGAATTGGATGCCAGCTGCACTTAGAATGCCGGAACTTGAACTCATTGACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGGTTGGgtatgaactatgaacaatgagtgaaa--aataccacatcagctgaagaggatatgatcctgatcttttctgtttctgttatgcag----------------

upper sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G11960.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCTGAATTGGATGCCAGATGCCCTGAAAATGCCAGAACCTGAGCTTATTGAACATGCAGGATTAGATTCTGCTGTCTACTTGCGTATTTACTTGATAGGgtatggatctcaatatgtcatctattttgtttttcttccagttgcttgttattagttaagctgtcatcagtgcttgtagctccataattgctggttgcat
|  |||| |||||||| |  || || || ||||| || |||||||||||||| ||||| ||||| |||||||||||||||||| | |||||||||||||||||   || |   | ||| || |  ||        ||   ||||||| | ||||||       | |  | |  |  |   | |    ||  |  |     
TCTTGAACTGGATGCCCGCGGCTCTAAAGATGCCTGAGCCTGAGCTTATTGATCATGCTGGATTGGATTCTGCTGTCTACTTGAGGATTTACTTGATAGGgtactaatgtt--tttgtgatttgcttgtgaaaggtt---gttgcttttgattagtatgatcttaaaaactaatgttgttttctctgttttttttcag--

upper sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G62320.1 (Arabidopsis thaliana), 5'ss of exon 1
TTCTGAATTGGATGCCAGATGCCCTGAAAATGCCAGAACCTGAGCTTATTGAACATGCAGGATTAGATTCTGCTGTCTACTTGCGTATTTACTTGATAGGgtatggatctcaatatgtcatctattttgtttttcttccagttgcttgttattagttaagctgtcatcagtgcttgtagctccataattgctggttgcat-----
|| | || |||||||| ||||| || || |||||||| ||||| |||||||| ||||| || || ||||||||||| |||||| | ||||||||||| |||||   |||  || ||||      |||  | || | | ||||| ||  ||||   ||    | |  |   |  | ||   |   |  ||| |   |   |     
TTTTAAACTGGATGCCTGATGCTCTTAAGATGCCAGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGCTGTTTACTTGAGGATTTACTTGATTGGgta---atcaaaaaatgt------tttgttcttgcatacagttactaattatagctttgttttttttttctaatggttttttttt--ttgtttactattttatag

upper sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT4G22120.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCTGAATTGGATGCCAGATGCCCTGAAAATGCCAGAACCTGAGCTTATTGAACATGCAGGATTAGATTCTGCTGTCTACTTGCGTATTTACTTGATAGGgtatggatctcaa-tatgtcatctattttgtttttcttccagttgcttgttattagttaagct-gtcatcagtgcttgtagctccataattgctggttgcat
|  |||||||||||||||| || ||||| ||||| || |||||||||||||| ||||| || || ||||| | ||| ||  | || ||||||| | | |||||  | | | || | |||    ||||| |||| |      || |  ||| ||| ||| |  | ||| |   ||  | ||  |    ||         |  |
TCTTGAATTGGATGCCAGAGGCTCTGAAGATGCCTGAGCCTGAGCTTATTGATCATGCTGGTTTGGATTCAGTTGTTTATCTCCGGATTTACTGGCTGGGgtaaagttttgaactttgtagattatttggtttatgggtttgt-gtgtgt-attggttgatttagtcttagttgaatctaattgacaaaaaaacaaaagggt