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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCACAAGAACTGGAAGGTTCGCAACGATGCCAACATCGACTTGGCCGCCGTCTGCGACTCCATCACGGATCCCAAAGATCCTCGCCTCCGTGAATTCGgtacgttagggttttcttaacgcggctcagatctgagtgatctgtgcgtatttggttcgggatggtgggttggatgcggatctcggttgatgtctttttgtttttgtttggtttggtttggttcag

Basic information

species Vitis vinifera
transcript Vv10s0116g00490.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00490.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g60040.1 (Oryza sativa), 5'ss of exon 1
ACGCACAAGAACTGGAAGGTTCGCAACGATGCCAACATCGACTTGGCCGCCGTCTGCGACTCCATCACGGATCCCAAAGATCCTCGCCTCCGTGAATTCGgtacgttagggttttcttaacg--cggctcagatc---tgagtg-----atctgtgcg-tatttggttcgggatggtgggt-tggatgcggatctcggttgatgtctttttgtt---tttgtttg--gtttggtttggttcag----------
  |||||||||||||||||| || ||||| |||||||||||  | |||||| |||||||||| ||||| || ||||| ||  | |||||||| || ||||||  | || | |     |  |   ||   ||   |   || | |     ||| | ||  |  ||| |||  | || |  || | | |     | |||   | ||| ||   |||   | ||   |   ||| || |  | |            
CAGCACAAGAACTGGAAGGTGCGGAACGACGCCAACATCGATCTCGCCGCCCTCTGCGACTCAATCACCGACCCCAAGGACGCCCGCCTCCGCGAGTTCGgtgagataagctcccggtggctcccgatccacgcccattgcgcgctcggatccgcgccctgcttgattctcgctgtttcgtctcgttttttttttcgaggggtgttttagcgttagatctgaaggcccttttgtcttttccgccggtggttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34549765|gb|CF517997.1|CF517997
EST:     CGTCTGCGACTCCATCACGGATCCCAAAGATCCTCGCCTCCGTGAATTCG                         GTCTGTTTTTCAAGAAGGCTGTTGCGGATTCGAATGCGCCGGTTCAGGAGA
genomic: CGTCTGCGACTCCATCACGGATCCCAAAGATCCTCGCCTCCGTGAATTCGgtacgttagg ... tttggttcagGTCCGTTTTTCAAGAAGGCTGTTGCGGATTCGAATGCGCCGGTTCAGGAGA
EST: gi|34550714|gb|CF518932.1|CF518932
EST:     CGTCTGCGACTCCATCACGGATCCCAAAGATCCTCGCCTCCGTGAATTCG                         GTCTGTTTTTCAAGAAGGCTGTTGCGGATTCGAATGCGCCGGTTCAGGAGA
genomic: CGTCTGCGACTCCATCACGGATCCCAAAGATCCTCGCCTCCGTGAATTCGgtacgttagg ... tttggttcagGTCCGTTTTTCAAGAAGGCTGTTGCGGATTCGAATGCGCCGGTTCAGGAGA