1 5' 3' |
AGAAGTTCTCATGTTTGGTAATGGAGTTCTGCCCGGGAGGAGATTTGCACACTCTTAGACAGAGGCAGCCAGGGAAACATTTTACTGAGCAAGCAGTGAAgtatgctatcatcttttaaacccatagtttcatttgaagcaacctttaacatagaatttgattctctttagttgttctgcatatcctggttaatcttata...
species | Vitis vinifera |
transcript | Vv10s0116g00440.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTCTTAGACAGAGGCAGCCAGGGAAACATTTTACTGAGCAAGCAGTGAA ATTTTATGTAGCAGAGGTCCTCTTAGCTCTAGAATACCTCCACATGCTTGGEST: gi|30301014|gb|CB977808.1|CB977808
genomic: ACTCTTAGACAGAGGCAGCCAGGGAAACATTTTACTGAGCAAGCAGTGAAgtatgctatc ... tcacctgcagATTTTATGTAGCAGAGGTCCTCTTAGCTCTAGAATACCTCCACATGCTTGG
EST: ACTCTTAGACAGAGGCAGCCTGGGAAACATTTTACTGAGCAAGCAGTGAA ATTTTATGTAGCAGAGGTCCTCTTAGCTCTAGAATACCTCCACATGCTTGG
genomic: ACTCTTAGACAGAGGCAGCCAGGGAAACATTTTACTGAGCAAGCAGTGAAgtatgctatc ... tcacctgcagATTTTATGTAGCAGAGGTCCTCTTAGCTCTAGAATACCTCCACATGCTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGTTCTCATGTTTGGTAATGGAGTTCTGCCCGGGAGGAGATTTGCACACTCTTAGACAGAGGCAGCCAGGGAAACATTTTACTGAGCAAGCAGTGAAgtatgctatcatcttttaaacccatagtttcatttgaagcaacctttaacatagaatttgattctctttagttgttctgcatatcctggttaatcttata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataga