1 5' 3' | 2 5' 3' |
GGCTGACTATTTGGCTTTGATGGATGGTCTGATAGAGGCCATGCAGAATAACATTCGCCGTGTTTTTGCATTTACTGATTCCGAGATCTTATATGACCAGgtgagcggtcgctatttttaaaacctatatttttctattcttataatcgttatatagattgttgaagatcacatagctaaggaagcagctgagactgtcc...
species | Vitis vinifera |
transcript | Vv10s0042g01130.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACATTCGCCGTGTTCTTGCATTTACTGATTCCGAGATCTTATATGACCAG ATTTCACATGCGGAGGAGGATGGGAATCCACTTTTGATGGCACTGAAGCAAEST: gi|161711767|gb|FC059995.1|FC059995
genomic: ACATTCGCCGTGTTTTTGCATTTACTGATTCCGAGATCTTATATGACCAGgtgagcggtc ... ttcctgacagATTTCACATGCGGAGGAGGATGGGAATCCACTTTTGATGGCACTGAAGCAA
EST: TTTTTGCATTTACTGATTCCGAGATCTTATATGACCAG ATTTC-CATGCGGAGGAGGATGGGAATCCACTTTTGATGGCACTGAAGCAA
genomic: TTTTTGCATTTACTGATTCCGAGATCTTATATGACCAGgtgagcggtc ... ttcctgacagATTTCACATGCGGAGGAGGATGGGAATCCACTTTTGATGGCACTGAAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGACTATTTGGCTTTGATGGATGGTCTGATAGAGGCCATGCAGAATAACATTCGCCGTGTTTTTGCATTTACTGATTCCGAGATCTTATATGACCAGgtgagcggtcgctatttttaaaacctatatttttctattcttataatcgttatatagattgttgaagatcacatagctaaggaagcagctgagactgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaag