1 5' 3' |
TGGGGTTATTGTGAATGCTAGTGAATCTAAACCAGAGAAGAAGGTGAAGAGTGTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATGgtatgaatgatattaactttctttaaattgggtgttgcataaatgtttacctgcattattatgatgggtgcttgaaaattggatggaaactgatcctctt...
species | Vitis vinifera |
transcript | Vv10s0003g04720.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTGTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATG GTGGGCCCTGGTGAGGTGGATGATGAACTAGAAGACGAGGTTGGGTCAGAGEST: gi|110416843|gb|EC982849.1|EC982849
genomic: GTGTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATGgtatgaatga ... tctcttgaagGTGGGCCCTGGTGAGGTGGATGATGAACTAGAAGACGAGGTTGGGTCAGAG
EST: GTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATG GTGGGCCCTGGTGAGGTGGATGATGAACTAGAAGACGAGGTTGGGTCAGAGEST: gi|71871378|gb|DT020433.1|DT020433
genomic: GTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATGgtatgaatga ... tctcttgaagGTGGGCCCTGGTGAGGTGGATGATGAACTAGAAGACGAGGTTGGGTCAGAG
EST: GTGTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATG GTGGGCCCTGGTGAGGTGGATGATGAACTAGAAGACGAGGTTGGGTCAGAGEST: gi|77583205|gb|DV220641.1|DV220641
genomic: GTGTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATGgtatgaatga ... tctcttgaagGTGGGCCCTGGTGAGGTGGATGATGAACTAGAAGACGAGGTTGGGTCAGAG
EST: GTGTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATG GTGGGCCCTGGTGAGGTGGATGATGAACTAGAAGACGAGGTTGGGTCAGAG
genomic: GTGTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATGgtatgaatga ... tctcttgaagGTGGGCCCTGGTGAGGTGGATGATGAACTAGAAGACGAGGTTGGGTCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGGTTATTGTGAATGCTAGTGAATCTAAACCAGAGAAGAAGGTGAAGAGTGTCAACTTTAACAGTCCACCAACCCGGGTACTGCTGCTCAGAAACATGgtatgaatgatattaactttctttaaattgggtgttgcataaatgtttacctgcattattatgatgggtgcttgaaaattggatggaaactgatcctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggaaa