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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTAGGGCAGTATATTCCAAGTCAGATATATACATATTTGATGATCCTTTAAGTGCTCTAGATGCACATGTTGCTCAACAGgtattctaatatttcttttcaccatttctatttctattgcattccactccaagccgaatatggttaccataatgtatgtgatattttttaagcccatgtt...

Basic information

species Vitis vinifera
transcript Vv10s0003g04460.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04460.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 21
----------------ATGGCTAGGGCAGTATATTCCAAGTCAGATATATACATATTTGATGATCCTTTAAGTGCTCTAGATGCACATGTTGCTCAACAGgtat-tctaatatttcttttcaccatttctatttctattgcattccac--tccaag--ccgaatatggttaccataatgtatgtgatattttttaagcccatgtt
                || |||||||| ||||| || || || |||||||| ||||||||||||||||| |||||||| ||||| ||| |||||||| |||||| |    |||||||| |||   | |  ||  | | | |||   |   |  |||  ||   |||||   | |   |  ||  | |    || ||         
AAAGCAAAGAGTTTCCATAGCTAGGGCTGTATACTCAAATTCGGATATATATATATTTGATGATCCTTTGAGTGCTCTTGATGCTCATATTGCTCAAGAGgtatcttccttatttcttatcaagctctagatgacaagtccatgttatggtataagtaccatctatggaggctagggtacattggttgaaattcaaaaat-----

upper sequence: Vv10s0003g04460.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 19
----------------ATGGCTAGGGCAGTATATTCCAAGTCAGATATATACATATTTGATGATCCTTTAAGTGCTCTAGATGCACATGTTGCTCAACAGgtattctaatatttc-ttttcaccatttctatttctattgcatt-ccactccaagccgaatatggttaccataatgtatgtgatattttttaagcccatgtt------------------------------------
                |||||||||||||| || || || |||||||| |||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||| ||  ||  |    | |||  ||  |  |||  ||   |      ||  || || || | || |   ||| | |     |||| | |      ||                                    
GAAGCAGAGAGTTTCAATGGCTAGGGCAGTCTACTCAAATTCAGATATTTACATATTTGATGATCCTTTCAGTGCTTTAGATGCTCATGTTGCTCACCAGgtattcttatggttgatccataacataactgataatatctcaaggctgacataaatcgcat-tgataactaatgtgtgtttagccattttcatgatttcatttctcatctaatgacagacttctctgaatcaagttag

upper sequence: Vv10s0003g04460.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 21
----------------ATGGCTAGGGCAGTATATTCCAAGTCAGATATATACATATTTGATGATCCTTTAAGTGCTCTAGATGCACATGTTGCTCAACAGgtattctaatatttcttttcaccatttctatttctattgcattccactccaagccgaatatggtta-ccataatgtatgtgat-attttttaagcccatgtt----------------------------------------------------------------------------
                |||||||||||||| || || || |||||| | |||||||| ||||||||||| |||||  ||||||| ||||||||||| |||||||||||||  ||  ||| |  |  |  ||    |   | |    ||   |      | || | | ||||    | | |||  | |    | |  |||                                                                               
GAAGCAGAGAGTCTCAATGGCTAGGGCAGTCTACTCAAATTCAGATGTTTACATATTCGATGATCCTTTGAGTGCATTAGATGCTCATGTTGCTCACCAGgtattctaatggttgattt-attacataaatgataacctcttaatgctgatattaatgtttgttcagccatttcatctatgaggaatccgcatgatcatccactgtattagaattttagttctcagtaatttttttaggtacatctgacgacagacttctctgaatcacaagtaacag