1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCTCTGGTTTGGGGGCGAGCCCAAAAACACCAGAACAACAATGGATGCTTTGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAGgtacatttcccttttgctcttctctgattttcttatttgtttgtttttaccattctgtttggttgctgggaatgtgtgggaaaaccggaaaagggaagaa...
species | Vitis vinifera |
transcript | Vv10s0003g02590.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAG GCTGTTATAAAACAGTTCGGTGGGACTGGTTATGAAAGTTCAGATGTAATGEST: gi|161714829|gb|FC063277.1|FC063277
genomic: TGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAGgtacatttcc ... tgaatttcagGCTGTTATAAAACAGTTCGGTGGGACTGGTTATGAAAGTTCAGATGTAATG
EST: TGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAG GCTGTTATAAAACAGTTCGGTGGGACTGGTTATGAAAGTTCAGATGTAATGEST: gi|110384739|gb|EC949198.1|EC949198
genomic: TGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAGgtacatttcc ... tgaatttcagGCTGTTATAAAACAGTTCGGTGGGACTGGTTATGAAAGTTCAGATGTAATG
EST: TGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAG GCTGTTATAAAACAGTTCGGTGGGACTGGTTATGAAAGTTCAGATGTAATGEST: gi|110693825|gb|EE070405.1|EE070405
genomic: TGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAGgtacatttcc ... tgaatttcagGCTGTTATAAAACAGTTCGGTGGGACTGGTTATGAAAGTTCAGATGTAATG
EST: TGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAG GCTGTTATAAAACAGTTCGGTGGGACTGGTTATGAAAGTTCAGATGTAATGEST: gi|110391854|gb|EC956857.1|EC956857
genomic: TGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAGgtacatttcc ... tgaatttcagGCTGTTATAAAACAGTTCGGTGGGACTGGTTATGAAAGTTCAGATGTAATG
EST: TGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAG GCTGTTATAAAACAGTTCGGTGGGACTGGTTATGAAAGTTCAGATGTAATG
genomic: TGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAGgtacatttcc ... tgaatttcagGCTGTTATAAAACAGTTCGGTGGGACTGGTTATGAAAGTTCAGATGTAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCTGGTTTGGGGGCGAGCCCAAAAACACCAGAACAACAATGGATGCTTTGAGAAAACAAGCCAGCAAGTTTAGGGAGCAGGTTGCCAAACAGCAACAGgtacatttcccttttgctcttctctgattttcttatttgtttgtttttaccattctgtttggttgctgggaatgtgtgggaaaaccggaaaagggaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaga