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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCTGGTTTGACAACCCCAGCGCTAAATCGAAGCAAGCCGCATGGGGCAGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatttcttggtcctttttctgttttttttttctctgtttgttttccgagaaatttcaggaaaaaagaagaaaataaaatgaatttcagttaagt...

Basic information

species Vitis vinifera
transcript Vv10s0003g02250.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02250.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G29420.1 (Glycine max), 5'ss of exon 1
CTTTCTGGTTTGACAACCCCAGCGCTAAATCGAAGCAAGCCGCATGGGGCAGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatttcttggtcctttttctgttttttttttctctgtttgttttccgagaaatttcaggaaaaaagaagaaaataaaatgaatttcagttaagt---------------------------------
| |||||||| ||||||||   | | || || || ||||||||||||||||| || || || || |||||||||||| | | |||||||||||| |||||||      ||  |   | |  ||||  ||  |||  || |   || |  ||       |    | ||   |   |    |    ||| | |  |  | |                                  
CCTTCTGGTTCGACAACCCTTCCTCCAAGTCCAAACAAGCCGCATGGGGCAGCTCCATCCGACCCATCTACACTTTCGCCACCGTTGAAGAGTTTTGGAGgtcaagctttgatcttttccctttcccttcctttcctcccaacttttcctctcctgggtc---gtaacctaattgcttctttcttgattcttggaaacgctaacccttgtttttctttttttttaatgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262433|gb|CA813496.1|CA813496
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|351030478|gb|FQ432416.1|FQ432416
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|351043287|gb|FQ444008.1|FQ444008
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTATAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|351024812|gb|FQ430637.1|FQ430637
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|77585822|gb|DV222012.1|DV222012
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110718702|gb|EE095839.1|EE095839
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|18459494|gb|BM437772.1|BM437772
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|33403709|gb|CF209336.1|CF209336
EST:     AACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|28967647|gb|CB346680.1|CB346680
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|30126393|gb|CB911732.1|CB911732
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|351041261|gb|FQ447388.1|FQ447388
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|351013219|gb|FQ424924.1|FQ424924
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|77586851|gb|DV222569.1|DV222569
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|349830175|gb|FQ420435.1|FQ420435
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|30124882|gb|CB910221.1|CB910221
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|30126337|gb|CB911676.1|CB911676
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|26261437|gb|CA812500.1|CA812500
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATGTACATCAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110372842|gb|EC937036.1|EC937036
EST:     GATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: GATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110370659|gb|EC930270.1|EC930270
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110729229|gb|EE105336.1|EE105336
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|30321708|gb|CD004970.1|CD004970
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|351027029|gb|FQ439889.1|FQ439889
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|161712276|gb|FC061899.1|FC061899
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|294966543|gb|GW837678.1|GW837678
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110722220|gb|EE098261.1|EE098261
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|349812898|gb|FQ410540.1|FQ410540
EST:     AGTTCGATGCGCCCGATCTACGCTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTATAACAATATACATCATCCGAGCAAGTCAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|71859814|gb|DT008869.1|DT008869
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110720594|gb|EE096655.1|EE096655
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|349809854|gb|FQ398479.1|FQ398479
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTATAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|26263843|gb|CA814906.1|CA814906
EST:     AGTTCGGTGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGTTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|27578982|gb|CB001677.1|CB001677
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|351012448|gb|FQ427049.1|FQ427049
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|30126203|gb|CB911542.1|CB911542
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|349825143|gb|FQ415690.1|FQ415690
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110402114|gb|EC968749.1|EC968749
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|349807274|gb|FQ401266.1|FQ401266
EST:     AGTTCGATGCACCCGATCTACACTTTCTCTAACGTTCAAGAGTTCTGGAG                         CATTTATAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAAACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|33403631|gb|CF209258.1|CF209258
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110713254|gb|EE089012.1|EE089012
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110367998|gb|EC931958.1|EC931958
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110401693|gb|EC968309.1|EC968309
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|161715411|gb|FC066473.1|FC066473
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110426279|gb|EC992681.1|EC992681
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|30128062|gb|CB913401.1|CB913401
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|110360035|gb|EC922556.1|EC922556
EST:     TGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: TGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|30134592|gb|CB919930.1|CB919930
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|351030954|gb|FQ438990.1|FQ438990
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|351012919|gb|FQ430482.1|FQ430482
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|27581098|gb|CB003793.1|CB003793
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
EST: gi|38516708|gb|CF983883.1|CF983883
EST:     AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAG                         CATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT
genomic: AGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatt ... ttgtatttagCATTTACAACAATATACATCATCCGAGCAAGTTAGCTGTCGGAGCAGACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTCTGGTTTGACAACCCCAGCGCTAAATCGAAGCAAGCCGCATGGGGCAGTTCGATGCGCCCGATCTACACTTTCTCTAACGTTGAAGAGTTCTGGAGgtatccgatttcttggtcctttttctgttttttttttctctgtttgttttccgagaaatttcaggaaaaaagaagaaaataaaatgaatttcagttaagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatga