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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTGTTGTGGCTGGGGCCTCCATTTCCCTTACAATGAGAAAGTGAAAGATTCTCTCTCGTCGCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcctctctatctcttccgttttcccaacctttttttcttcctcatttatttgctctttttgtttctcagacaaatgacgaactccagttatat...

Basic information

species Vitis vinifera
transcript Vv10s0003g01480.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712383|gb|EE089944.1|EE089944
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|30135526|gb|CB920864.1|CB920864
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110711352|gb|EE087735.1|EE087735
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71865182|gb|DT014237.1|DT014237
EST:     CCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|161713266|gb|FC063080.1|FC063080
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110713972|gb|EE090359.1|EE090359
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71863156|gb|DT012211.1|DT012211
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71881193|gb|DT030248.1|DT030248
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110713489|gb|EE089456.1|EE089456
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71860238|gb|DT009293.1|DT009293
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110712650|gb|EE087882.1|EE087882
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|352794803|gb|FQ475298.1|FQ475298
EST:     GTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: GTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110711542|gb|EE088143.1|EE088143
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71881129|gb|DT030184.1|DT030184
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71855884|gb|DT004939.1|DT004939
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110687697|gb|EE065401.1|EE065401
EST:     ATTCTCTCTCGTCGCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: ATTCTCTCTCGTCGCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71861754|gb|DT010809.1|DT010809
EST:     CCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|294966698|gb|GW839689.1|GW839689
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110690114|gb|EE066940.1|EE066940
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110711670|gb|EE088415.1|EE088415
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71855247|gb|DT004302.1|DT004302
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71864023|gb|DT013078.1|DT013078
EST:     AAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: AAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110713041|gb|EE088616.1|EE088616
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71865215|gb|DT014270.1|DT014270
EST:     CCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110719262|gb|EE097039.1|EE097039
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110712783|gb|EE088141.1|EE088141
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACACC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110713002|gb|EE088542.1|EE088542
EST:     TTCTCGCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110713463|gb|EE089416.1|EE089416
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110712273|gb|EE089706.1|EE089706
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110711844|gb|EE088789.1|EE088789
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110699277|gb|EE076136.1|EE076136
EST:     CTCATCCTCTTGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: CTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|71883493|gb|DT032548.1|DT032548
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|33405718|gb|CF211345.1|CF211345
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110391404|gb|EC956378.1|EC956378
EST:     TTCTCTCTCGTCGCCCGCCGGGAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC
EST: gi|110713575|gb|EE089626.1|EE089626
EST:     TTCTCTCTCGTCGCCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAG                         GAAATCTCTGCCCCTGTTGTCGATGGGAATGATCCTGTCACAGGTCACATC
genomic: TTCTCTCTCGTCG-CCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcc ... attgtcacagGAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTTGTTGTGGCTGGGGCCTCCATTTCCCTTACAATGAGAAAGTGAAAGATTCTCTCTCGTCGCCGCCGGAAAATCTCATCCTCATGTCCGACGACAAGgttgcattcctctctatctcttccgttttcccaacctttttttcttcctcatttatttgctctttttgtttctcagacaaatgacgaactccagttatat

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