Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAGCTAATCTCTGAGAGATCGGTGATGGCATCCTCCAAAGACCGCGACACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctctctctttctcctgtttgtggatctcggattaccccactctcactgttagagttagggtttccaattatctgatcactacctgaattttactctgtttttttttttttggtag

Basic information

species Vitis vinifera
transcript Vv10s0003g01240.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g11110.1 (Oryza sativa), 5'ss of exon 1
GAAAAGCTAATCTCTGAGAGATCGGTGATGGCATCCTCCAAAGACC---GCGACACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctctctctttctcctgtttgtggatctcggattaccccactctcactgttagagttagggtttccaattat-ctgatcactacctgaattttactctgtttttttttttttggtag
    |||    ||| |   ||||  |         | |||  | ||   |||||  | |||||||| | ||||||||||||||||| |||||||| || ||||||   |    | |     |    |  |    |  |   | || | ||  | ||| | | | | |||  |    |  |  ||  |  |   ||  ||||                        
---CAGCCTCGCTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGgtacgcgatcccccccggctccctcctcccccctgccgttcctccctacctctgctcgtgcttgggggttttgtggtgttgtgctgtgtgtgtgttttgg----------------------

upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G29080.7 (Glycine max), 5'ss of exon 1
GAAAAGCTAATCTCTGAGAGATCGGTGATGGCATCCTCCAAAGACCGCGACACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccc-----tctctctttctcctgtttgtggatctcggatt--accccactctcactgttagagttagggtttccaattatctgatcactacctgaattttactctgtttttttttttttggtag
||  ||  |     |   |||||    ||||| ||| |||| || || || | ||||||||||||||||||||||||||| |||||||| |||||||| ||| |        |    | ||||| |  ||       |  ||||  |       | ||||||         | | | ||||||  | |||    | ||    ||                        
GAGGAGAGAGAAAGTAGCAGATCCTCCATGGCCTCCACCAAGGAACGTGAAAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataataataatccattctcttaatttccatgttgagatttgagagtcaccacactgtgctgacctagatgttcaattagataatc----cttgttcctt------------------------

upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G12220.5 (Glycine max), 5'ss of exon 1
GAAAAGCTAATCTCTGAGAGATCGGTGATGGCATCCTCCAAAGACCGCGACACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctctctctttctcctgtttgtggatctcggattaccccactctcactgttagagttagggtttccaattatctgatcactacctgaattttactctgtttttttttttttggtag
||  ||  |     |    ||||    ||||| ||| |||| || ||||| | ||| ||||||  ||||||||||||||| |||||||| |||||||| ||| |                |  |  |     ||   |  |  || |  ||   | ||| ||  |  |  | |   | || | ||  |  ||  |||| |  | |  |    ||||     
GAGGAGAGAGAAAGTAGCTGATCCTCCATGGCCTCCACCAAGGAACGCGAAAACTTTGTCTACACCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtatat--------------taataataataatccattctcttcatttccatgttgagatttgagagtcaccacactgtgctgac--ctagatgtttaattagataatcgcctttt-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349809819|gb|FQ398444.1|FQ398444
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|110723333|gb|EE100523.1|EE100523
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|71866787|gb|DT015842.1|DT015842
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351053794|gb|FQ441560.1|FQ441560
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGGGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349812444|gb|FQ407063.1|FQ407063
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349808236|gb|FQ403423.1|FQ403423
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351024890|gb|FQ433307.1|FQ433307
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349828886|gb|FQ419219.1|FQ419219
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351047266|gb|FQ454877.1|FQ454877
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|161717158|gb|FC064700.1|FC064700
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|110686512|gb|EE064232.1|EE064232
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|352763769|gb|FQ473472.1|FQ473472
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|34549980|gb|CF518212.1|CF518212
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351025105|gb|FQ433522.1|FQ433522
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349813283|gb|FQ411523.1|FQ411523
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCAAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349816139|gb|FQ399370.1|FQ399370
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351019964|gb|FQ439781.1|FQ439781
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349811098|gb|FQ406086.1|FQ406086
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|30299169|gb|CB975963.1|CB975963
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351036840|gb|FQ459362.1|FQ459362
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349821467|gb|FQ411088.1|FQ411088
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAATGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349823307|gb|FQ402506.1|FQ402506
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAATGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349827790|gb|FQ422658.1|FQ422658
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349824616|gb|FQ413283.1|FQ413283
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349821782|gb|FQ408220.1|FQ408220
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|71857842|gb|DT006897.1|DT006897
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|110719939|gb|EE095488.1|EE095488
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351030304|gb|FQ432242.1|FQ432242
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|110689879|gb|EE066488.1|EE066488
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|71864380|gb|DT013435.1|DT013435
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349826263|gb|FQ416068.1|FQ416068
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351029922|gb|FQ427762.1|FQ427762
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|294966116|gb|GW837483.1|GW837483
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|161717280|gb|FC069185.1|FC069185
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351018819|gb|FQ425721.1|FQ425721
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|110685470|gb|EE062216.1|EE062216
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|161711700|gb|FC058282.1|FC058282
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|161713990|gb|FC063175.1|FC063175
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349827590|gb|FQ422458.1|FQ422458
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|71870436|gb|DT019491.1|DT019491
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351031569|gb|FQ459826.1|FQ459826
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351016120|gb|FQ432075.1|FQ432075
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349827588|gb|FQ422456.1|FQ422456
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|110706390|gb|EE081872.1|EE081872
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|349828573|gb|FQ417315.1|FQ417315
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGGCGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|110710971|gb|EE087636.1|EE087636
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
EST: gi|351048670|gb|FQ448944.1|FQ448944
EST:     CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACG                         AAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG
genomic: CACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctct ... tttttggtagAAATGGTGGATTCCATGAAGAAAGTGGCGAAGCTGGACGTGGAATTGACCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAAGCTAATCTCTGAGAGATCGGTGATGGCATCCTCCAAAGACCGCGACACCTTCGTCTACGTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGACGgtttccctctctctttctcctgtttgtggatctcggattaccccactctcactgttagagttagggtttccaattatctgatcactacctgaattttactctgtttttttttttttggtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG