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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCGTCTCTTCCACAACAAGCTCTTCAACCGCTATGTCAAACGAACCAGCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgttaaagcaatcggttccttcctttctccacttctgctttttcataatggataaaataacttgtgaaacaacattatcattccag

Basic information

species Vitis vinifera
transcript Vv09s0070g00270.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0070g00270.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G177654_T01 (Zea mays), 5'ss of exon 1
GGACCGTCTCTTCCACAACAAGCTCTTCAACCGCTATGTCAAACGAACCAGCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgttaaagc-------aatcggttccttcctttctccacttctgctttttcataatggataaaataacttgtgaaacaacattatcattccag-
|||||||||||||||||||||| | | ||||||||| ||||| || |||  |||||||||||| || |||||  || ||  |||||||||||| ||||| ||| ||  ||   ||       | |||  |||  || ||| ||  |     ||| | |   ||   ||| || |      |||  |  ||  | |   | 
GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaattcttgctccttcgattcgtctccaccccttccccgttctgattttgtaaggctgtggaaattagcgatgctaacttctgtaagactggtgt

upper sequence: Vv09s0070g00270.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G49400.1 (Arabidopsis thaliana), 5'ss of exon 1
GGACCGTCTCTTCCACAACAAGCTCTTCAACCGCTATGTCAAACGAACCAGCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgttaaagcaatcggttccttcctttc--tccacttctgctt--tttcataatggataaaataacttgtgaaacaa--cattatcattccag----------------------------------------
 ||  | ||||||||||||||  ||| ||| ||||| |||||||||||   ||| ||||||||||| |||||  |  ||  ||||||||| || || ||||| | || |    ||| |   ||| | ||||||  || | ||  | ||  || | |  |  | |    | |   |  ||  |  | || | |||  |                                         
CGATAGACTCTTCCACAACAAAATCTACAATCGCTACGTCAAACGAACTTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCGGCGATCGAgtaaattctctc-gcatttccttcttccctttcactctaatttcgtttgattccgtcttttaaatctgagccacttgaattaggctttgtgattgaacctctgaggctaagaaatttgaaaatctggttgatgtgtag