Sequence
atgc intronic sequence ATGC exonic sequenceCTCTCTCCCTCCGCCAGAAAAAATGCCGTCGGTGTACGGAGCTCGAATGACCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAGgtacttttctccgcatccaatcttcaattccgtcggatttttgtaggtttttcatttgcttactcgctgtagttcagattcggattgctcctatttgtaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os06g45120.2 (Oryza sativa), 5'ss of exon 1
CTCTCTCCCTCCGCCAGAAAAAATGCCGTCGGTGTACGGAGCTCGAATGACCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAGgt------acttttctccgcatccaatcttcaattccgt-cggatttttgtaggtttttcatttgcttactcgctgtagt-tcagattcggattgctcctatttgtaa
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CGCGCCCCCGCCCCCGCCGGCGACGACCACCATGTCGTACGATCGCGTCACGACCTTCGAGGACTCGGAGAAGGAGAGCGAGTACGGCTACGTCCGCAAGgttccctcacccctcatcgtcttccttcctcttccccatgttggattggatcggtcactctcgtgcgtagatgcggcggcctctgcttcggattcggctt--------
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 1
CTCTCTCCCTCCGCCAGAAAAAATGCCGTCGGTGTACGGAGCTCGAATGACCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAGgtacttttctccgcatccaatcttcaattccgtcggatt--tttgtaggtttttcatttgct-tactcgctgtagttcagattcggattgctcctatttgtaa
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GCCGCCCTCGTCCTCGCCGCCGGCGGCCATGGCGTTCGGCGACCGCATCACCACCTTCGAGGACTCCGAGAAGGAGAGCGAGTACGGCTACGTCCGCAAGgtccgtcaccccccctcctccccccctctccgctatactcctctgctcgcattgcttccaatgtagatcccaccgtgctcgttccgcgcgatcccgacgg---
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 1
CTCTCTCCCTCCGCCAGAAAAAATGCCGTCGGTGTACGGAGCTCGAATGACCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAGgtacttttctccgcatccaatcttcaattccgtcggatttttgtaggtttttc-atttgcttactcgc--tgtagttcagattcggattgctcctatttgtaa
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CCGACGACCCCTCTCGCCGCCGGCGGCCATGGCGTACGGCGACCGCGTCACCACCTTCGAGGACTCCGAGAAGGAGAGCGAGTACGGCTATGTCCGCAAGgtccgcgcctcccccttcctctcccgcccgcatcgcttgcgcctagatcccgctgctcggtttcgcgcgatctatagtgggcgtgggctgcac--gcctgca-
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G421857_T04 (Zea mays), 5'ss of exon 1
CTCTCTCCCTCCGCCAGAAAAAATGCCGTCGGTGTACGGAGCTCGAATGACCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAGgtacttttctccgcatccaatcttcaattccgtcggatttttgtaggtttt-tcatttgcttactcgc--tgtagttcagattcggattgctcctatttgtaa---------------------------------------------------------
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----------------------------ATGGCGTACGGCGACCGCGTCACCACCTTCGAGGACTCCGAGAAGGAGAGCGAGTACGGCTATGTCCGCAAGgtccgcgcctcccccttcctctcccgcccgcatcgcttgcgcctagatcccgctgctcggtttcgcgcgatctatagtgggcgtgggctgcacgcctgcacggcaccgtgtatgggtcgtcggcgtctggcgtgctcggatcgagctgaattgctgtcag
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 1
CTCTCTCCCTCCGCCAGAAAAAATGCCGTCGGTGTACGGAGCTCGAATGACCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAGgtacttttctccgcatccaatcttcaattccgtcggatttttgtaggtttttcatttgcttactcgctgtagttcagattcggattgctcctatttgtaa---
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CCAACGACCACTCTCGCCGCCGGCGGTCATGGCGTACGGCGACCGCGTTACCACCTTCGAGGACTCAGAGAAGGAGAGCGAGTACGGCTATGTCCGCAAGgtccgcgtctccccctcctctcctcgtatcgctcgcattgctt---gcgctagatcccgctgcccgatttcgcgcgatctcttgtgggcgcgggctgcacggt
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 1
CTCTCTCCCTCCGCCAGAAAAAATGCCGTCGGTGTACGGAGCTCGAATGACCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAGgtacttttctccgcatccaatcttcaattccgtcggatttttgt---aggtttttcatttgcttactcgctgtagttcagat--tcggattgctcctatttgtaa
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CAATCTCATCTCCGATCTCAAAATGCCCGCTGTTTATGGAGCTCGCTTGACCACCTTCGAAGACTCCGAGAAGGAGAGTGAATACGGTTACGTTCGCAAGgtttctgtttcttctcc---tctccatttccctcttttcttcatccaaatccaatcgctctattactcttt-tacttcccaccatcctatctcttaaattacta-
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 1
--CTCTCTCCCTCCGCCAGAAAAAATGCCGTCGGTGTACGGAGCTCGAATGACCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAGgtacttttctccgcatccaatcttcaattccgtcggatttttg---taggtttttcatttgcttac--tcgctgtagttcagattcggattgctcctatttgtaa
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CACTCTCTTCTCCGATCTCAAAA--TGCCCGCCGTTTATGGAGCTCGCTTGACCACCTTCGAAGACTCCGAGAAGGAGAGTGAATACGGTTACGTTCGCAAGgtttgtgtttcttctcc---tcttcaattccctttcatttccaccatcggatccaaatccattcccctccgcactcgtgcgagtttcacgt-cttcgctctgtt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718002|gb|FC067562.1|FC067562EST: CCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAG GTGTCGGGACCAGTTGTCGTCGCAGATGGAATGGCAGGGGCTGCTATGTAT
genomic: CCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAGgtacttttct ... catttgacagGTGTCGGGACCAGTTGTCGTCGCAGATGGAATGGCAGGGGCTGCTATGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCTCTCCCTCCGCCAGAAAAAATGCCGTCGGTGTACGGAGCTCGAATGACCACGTTCGAGGACTCGGAGAAGGAAAGCGAGTACGGTTACGTTCGCAAGgtacttttctccgcatccaatcttcaattccgtcggatttttgtaggtttttcatttgcttactcgctgtagttcagattcggattgctcctatttgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA