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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgtccactctggaactttcag

Basic information

species Vitis vinifera
transcript Vv09s0054g00140.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
AGCAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgtccac-tctggaactttcag
   | |  |||  ||  | ||||||||  ||||||||| |||| || || || |||||||| || |||| |||  | || ||||| |||||||||||||||||||  | |         ||||||   | | ||| |    | |   ||  | |||||| || | |||   ||     | ||  | || |||
--GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgccta--------ttatttgtgt-gttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag

upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
AGCAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgtccactc--tggaactttcag-------
   ||| ||| | ||      ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| |||||||||||   ||  | |   | |   ||    |  |||| |  |  |      |  |  |          |    |||||      |  |   || |       
--GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact

upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S243_40V6.1 (Physcomitrella patens), 5'ss of exon 2
AGCAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactat-agttatttccattgatacctttactt----tcatattaatattc--tggttct-cattcctgtccactctggaac--tttcag---------------------
   ||| |||   ||   | ||||||   ||||||||||||||||||||||| || || || ||||||  ||| ||| | ||| | || |||||||||||||| |  || |    |  |  |  ||   |    |  |||| ||    ||    | | |  |  ||||||| ||      || |   |  |||  ||  |                      
--GAAAAGGATTTGATCAATTTGAAGAGGGAGGCTAAGCTGAAGGGTGGATTCTATGTCGAGCCAGAGCCTAAGCTTATGTTTGTCATCCGTATCCGTGGgtaggacctcgttaaacgaacttcttttgtgctcaattttaattcgcttccccctgagagccattggttcttcagcgaaatctagcgtaaaacacttctaactagtgttattgttgatccag