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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAAGCAAGAGGTTGAGGCGAAAAAGAAGAAGAATGCTGATAATCGGAAACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcatagttttgtctcatgtatttgtttttctgttttactcgtgaagatttaggtagttttaactaatagacgacacatttttcatgcag

Basic information

species Vitis vinifera
transcript Vv09s0054g00010.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719010|gb|FC067630.1|FC067630
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|351030969|gb|FQ439005.1|FQ439005
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|110427908|gb|EC994363.1|EC994363
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|110362548|gb|EC926091.1|EC926091
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|71865492|gb|DT014547.1|DT014547
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|77588453|gb|DV223438.1|DV223438
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|110686521|gb|EE064257.1|EE064257
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|71870639|gb|DT019694.1|DT019694
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|71873389|gb|DT022444.1|DT022444
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|110362206|gb|EC925723.1|EC925723
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|110360464|gb|EC923584.1|EC923584
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|161716946|gb|FC068826.1|FC068826
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|71873570|gb|DT022625.1|DT022625
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|161719477|gb|FC067687.1|FC067687
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|71873637|gb|DT022692.1|DT022692
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|110387232|gb|EC951884.1|EC951884
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|161714799|gb|FC063247.1|FC063247
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
EST: gi|110365131|gb|EC928904.1|EC928904
EST:     AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAG                         CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT
genomic: AACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcat ... tttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGAAGCAAGAGGTTGAGGCGAAAAAGAAGAAGAATGCTGATAATCGGAAACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTACGAGGAGCAGgtactctcatagttttgtctcatgtatttgtttttctgttttactcgtgaagatttaggtagttttaactaatagacgacacatttttcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG