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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCCCGGGAAGGCCTTGAGGGATTGGGACCTCTGGGGGCCGTTCTTCTTTGTCATCTTCCTCGGTCTCACCTTGTCCTGGTCTGCATCCATCAAAAAGgtgagtaccataccttcagaaatggcgaatcttgagtgagattctgaccacctatgtcgtttattttccag

Basic information

species Vitis vinifera
transcript Vv09s0018g01790.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g64760.1 (Oryza sativa), 5'ss of exon 1
AGACCCCGGGAAGGCCTTGAGGGATTGGGACCTCTGGGGGCCGTTCTTCTTTGTCATCTTCCTCGGTCTCACCTTGTCCTGGTCTGCATCCATCAAAAAGgtgagtaccataccttcagaaatgg---cgaatcttgagtgagattctgaccacct----atgtcgtt--tattttccag--------------------
 |||||||| |||||  | ||||||||||| ||||||||||| ||||||||  || | |||||||| |||||  | |||||||| || ||| |||| |||||   |||  | | |  | ||   |   ||     ||| |||  || |    | ||    |||  | |  |   | | |                     
GGACCCCGGCAAGGCGCTCAGGGATTGGGATCTCTGGGGGCCCTTCTTCTTCATCGTTTTCCTCGGCCTCACACTCTCCTGGTCCGCCTCCGTCAAGAAGgtacctactctccttcgacaaccagatccgctggctgattgactttgtatggatctggaaatgctggtgttgcctgcgaagtattcgatctcttaggttt

upper sequence: Vv09s0018g01790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os05g36150.1 (Oryza sativa), 5'ss of exon 1
AGACCCCGGGAAGGCCTTGAGGGATTGGGACCTCTGGGGGCCGTTCTTCTTTGTCATCTTCCTCGGTCTCACCTTGTCCTGGTCTGCATCCATCAAAAAGgtg----agtaccataccttcagaaatggcgaat-cttgagtgagattctgaccacctatgtcgtttattt--tccag----------------------
 ||||||||||||||  || | || ||||| |||||||| || ||||||||  || |||||||||| |||||| | |||||||| || ||| |||| |||||      | | |    | |  ||  |   |  | |||  ||||  | |   |    |   |  |  |||   |  ||                      
GGACCCCGGGAAGGCGCTGCGCGACTGGGATCTCTGGGGCCCTTTCTTCTTCATCGTCTTCCTCGGCCTCACCCTCTCCTGGTCAGCCTCCGTCAAGAAGgtaccacggcatctgggcatttgattttctgccttcttatgtgaagtccgatctctttccatgatcgattagatttagttgattccccaaccctttaatg

upper sequence: Vv09s0018g01790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G07130.2 (Glycine max), 5'ss of exon 1
AGACCCCGGGAAGGCCTTGAGGGATTGGGACCTCTGGGGGCCGTTCTTCTTTGTCATCTTCCTCGGTCTCACCTTGTCCTGGTCTGCATCCATCAAAAAGgtgagtaccataccttca--gaaatggcgaatcttgagtgagattctgaccacctatgtcgtttat--tttccag-------------------------
 |||||||| |||||| | ||||||||||| || ||||| || ||||||||  |  |||||||||| |||||| | || |||||||| ||  ||||||||||   | | |   | | |      |     ||   ||  || |  || ||   |    ||  |||   ||| | |                         
GGACCCCGGTAAGGCCCTCAGGGATTGGGATCTGTGGGGCCCTTTCTTCTTCATTGTCTTCCTCGGCCTCACCCTCTCTTGGTCTGCCTCTGTCAAAAAGgtatttcctaattcattattaggtttttctattcagatcgaaaaccttactttcctgatctgttacgatttgctgatctgcgtctctcagctgatctact