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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATAGCAGTCTCAAGGCCCTTGAAAACCCTCTGCTTTGCATCTGTAGAGTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaatttttttgggctcttttctgggttttctttttgatgtaatgctcagttttgaagtgtagtttcctccattttctgggtatttattgtttcc...

Basic information

species Vitis vinifera
transcript Vv09s0018g01780.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823556|gb|FQ414966.1|FQ414966
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|28965852|gb|CB344885.1|CB344885
EST:     GTCTCCTTTGGATGGAATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|32271352|gb|CD720511.1|CD720511
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|351024111|gb|FQ423534.1|FQ423534
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|351031377|gb|FQ445402.1|FQ445402
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|34542620|gb|CF510852.1|CF510852
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|349823504|gb|FQ414914.1|FQ414914
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|32248427|gb|CD714246.1|CD714246
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|351015119|gb|FQ444408.1|FQ444408
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|351022170|gb|FQ438755.1|FQ438755
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|110390868|gb|EC955807.1|EC955807
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|26262317|gb|CA813380.1|CA813380
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|294965939|gb|GW839278.1|GW839278
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGCGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|32268834|gb|CD717993.1|CD717993
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|29784391|gb|CB345050.2|CB345050
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|32269676|gb|CD718835.1|CD718835
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|110383897|gb|EC948302.1|EC948302
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: gi|110687744|gb|EE065504.1|EE065504
EST:     GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG                         GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCATAGCAGTCTCAAGGCCCTTGAAAACCCTCTGCTTTGCATCTGTAGAGTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaatttttttgggctcttttctgggttttctttttgatgtaatgctcagttttgaagtgtagtttcctccattttctgggtatttattgtttcc

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