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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGTACCTGTGCCACCGGTCAAGATTTCAACCATTGCTCCTGTATACCCAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattttctttttatttttatttttttgtttgtggtttcaatgcttgaacttggggttgtgggtccatgggactcaaaaagtgttgctttctattg...

Basic information

species Vitis vinifera
transcript Vv09s0018g01710.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349809484|gb|FQ414374.1|FQ414374
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351039210|gb|FQ457885.1|FQ457885
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349827356|gb|FQ421629.1|FQ421629
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|352795514|gb|FQ480102.1|FQ480102
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349812219|gb|FQ411814.1|FQ411814
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|352791460|gb|FQ481039.1|FQ481039
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351042630|gb|FQ451045.1|FQ451045
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351053774|gb|FQ441540.1|FQ441540
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACCGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349828848|gb|FQ419181.1|FQ419181
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349818650|gb|FQ403285.1|FQ403285
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351044071|gb|FQ452744.1|FQ452744
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|110365693|gb|EC929076.1|EC929076
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349808023|gb|FQ402414.1|FQ402414
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351048747|gb|FQ449615.1|FQ449615
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351037484|gb|FQ460683.1|FQ460683
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351047482|gb|FQ454974.1|FQ454974
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|27583752|gb|CB006447.1|CB006447
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTC
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|30137999|gb|CB923337.1|CB923337
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351028807|gb|FQ433237.1|FQ433237
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349819475|gb|FQ413359.1|FQ413359
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351053076|gb|FQ456683.1|FQ456683
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351032515|gb|FQ458880.1|FQ458880
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351036139|gb|FQ463984.1|FQ463984
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351036156|gb|FQ464001.1|FQ464001
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|33404798|gb|CF210425.1|CF210425
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349809654|gb|FQ414544.1|FQ414544
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTN
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349813656|gb|FQ413890.1|FQ413890
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351053571|gb|FQ462646.1|FQ462646
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351057426|gb|FQ454108.1|FQ454108
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351016422|gb|FQ423849.1|FQ423849
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351037773|gb|FQ464214.1|FQ464214
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349817264|gb|FQ405268.1|FQ405268
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351040618|gb|FQ438162.1|FQ438162
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349824137|gb|FQ417524.1|FQ417524
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349810966|gb|FQ405954.1|FQ405954
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351053617|gb|FQ440126.1|FQ440126
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACACTCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351043158|gb|FQ451331.1|FQ451331
EST:     CAGCTTCGGCTCCTGGTGCTGGCGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351046990|gb|FQ454600.1|FQ454600
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|349819739|gb|FQ402676.1|FQ402676
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351054270|gb|FQ450352.1|FQ450352
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351043403|gb|FQ451455.1|FQ451455
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351022180|gb|FQ438765.1|FQ438765
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
EST: gi|351033445|gb|FQ462096.1|FQ462096
EST:     CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAG                         GCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT
genomic: CAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattt ... atgtaaacagGCTCATCAGTTATTCCAAAGGGATGCACAGACAATCACACCTGAAGCTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATGTACCTGTGCCACCGGTCAAGATTTCAACCATTGCTCCTGTATACCCAGCTTCGGCTCCTGGTGCTGGTGTCTACTCGCTCCCGCAATATCAGCAGgtgagaattttctttttatttttatttttttgtttgtggtttcaatgcttgaacttggggttgtgggtccatgggactcaaaaagtgttgctttctattg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaag