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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTTTAGCTGAGTTTGATGGCTATGGATAGTTCTAATTGGATGGCCGCTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaaatattagtcttgtaggggtagatggtgttgttgggatgattacatatgtgctagatttggggttcttattcttttttttttcttttggttgcag

Basic information

species Vitis vinifera
transcript Vv09s0018g00240.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349818243|gb|FQ409018.1|FQ409018
EST:     CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG                         AAGAAGGAGGTGCAGGA-GATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
EST: gi|349810369|gb|FQ401815.1|FQ401815
EST:     CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG                         AAGAAGGAGGTGCAGGA-GATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
EST: gi|294967229|gb|GW840104.1|GW840104
EST:     CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG                         AAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
EST: gi|161712086|gb|FC061458.1|FC061458
EST:     CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG                         AAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
EST: gi|161706799|gb|FC055509.1|FC055509
EST:     CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG                         AAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
EST: gi|351054947|gb|FQ440286.1|FQ440286
EST:     CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG                         AAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA