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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTCAGAGACACCATGGCTGGAAAACAACAACAGCGATACCGGGGCGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACTgtaattcccgtttcctgataccttttctccaatgttatactccaacgcatccaaggaaacgtttcgctttttaggtgttgtgctctttgtttttgtcatgtattgaaagaagaactaagttttgtatttgttttgggcacag

Basic information

species Vitis vinifera
transcript Vv09s0002g09120.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g09120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G06780.1 (Glycine max), 5'ss of exon 1
---ACCTCAGAGACACCATGGCTGGAAAACAACAACAGCGATACCGGGGCGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACTgtaattcccgtttcctgataccttttctccaatgttatactccaacgcatccaaggaaacgtttcgctttttaggtgttgtgctctttgtttttgtcatgtattgaaagaagaactaagttttgtatttgttttgggcacag
     ||       ||||||||  ||     ||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||| || ||  || ||||| | ||  ||   | | |  || |    |  ||  |||       |  | |  | |    ||  |    |  |||||              |||| | |   |||  |   |                           
CGTTTCTTTTCCCTACCATGGCCAGA---TCACAACAGCGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTgtaagtgccccttttggtttcacttccattcacatttcacttatctttagactaaaataaacatcagtaac-aaatgttg--------------gtcaagcaaaaaaaataagtc---------------------------

upper sequence: Vv09s0002g09120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G06690.1 (Glycine max), 5'ss of exon 1
---ACCTCAGAGACACCATGGCTGGAAAACAACAACAGCGATACCGGGGCGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACTgtaattcccgtttcctgataccttttctccaatgttatactccaacgcatccaaggaaacgtttcgctttttaggtgttgtgctctttgtttttgtcatgtattgaaagaagaactaagttttgtatttgttttgggcacag
     ||       | ||||||  ||     ||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||||| || ||  || ||||| | ||  ||     |   ||  ||||||||  | | | || |  ||| | |||              ||     |   |    ||||        || | | || |  || ||     ||                  
CGTTTCTTTTCCCTAACATGGCCAGA---TCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTgtaagtgccccttt----tgttttcactccaatgc-acatttca-cttatctatgga-------------ctaaaaaatagaccaaatgttg-------gtctagcaaaagaaattagtccatggc----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33409636|gb|CF215263.1|CF215263
EST:     CGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACT                         GAAGACTAGAATATGGCTAGGCACGTTCGAAACGGCTGAGGACGCGGCACG
genomic: CGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACTgtaattcccg ... ttgggcacagGAAGACTAGAATATGGCTAGGCACGTTCGAAACGGCTGAGGACGCGGCACG
EST: gi|33409230|gb|CF214857.1|CF214857
EST:     CGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACT                         GAAGACTAGAATATGGCTAGGCACGTTCGAAACGGCTGAGGACGCGGCACG
genomic: CGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACTgtaattcccg ... ttgggcacagGAAGACTAGAATATGGCTAGGCACGTTCGAAACGGCTGAGGACGCGGCACG
EST: gi|110364972|gb|EC928615.1|EC928615
EST:     CGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACT                         GAAGACTAGAATATGGCTAGGCACGTTCGAAACGGCTGAGGACGCGGCACG
genomic: CGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACTgtaattcccg ... ttgggcacagGAAGACTAGAATATGGCTAGGCACGTTCGAAACGGCTGAGGACGCGGCACG